Cluster: ShaoY_2019_ERR3405274_bin.1_CGC25
🧬 Cluster Details
- Gene Count: 10
- CAZyme Count: 1
- Substrate:
- Genome ID: ShaoY_2019_ERR3405274_bin.1
- CGC Family ID: CGCFAM_02824
- Continent: Europe
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | ShaoY_2019_ERR3405274_bin.1_k141_2140 | ShaoY_2019_ERR3405274_bin.1_k141_2140_2 | 619 | 1179 | + | 2.A.107.2.1 |
| TF | ShaoY_2019_ERR3405274_bin.1_k141_2140 | ShaoY_2019_ERR3405274_bin.1_k141_2140_3 | 1244 | 1654 | + | FUR |
| TC | ShaoY_2019_ERR3405274_bin.1_k141_2140 | ShaoY_2019_ERR3405274_bin.1_k141_2140_4 | 1798 | 2592 | - | 3.A.1.15.3 |
| TC | ShaoY_2019_ERR3405274_bin.1_k141_2140 | ShaoY_2019_ERR3405274_bin.1_k141_2140_5 | 2621 | 3262 | - | 3.A.1.15.11 |
| pfam | ShaoY_2019_ERR3405274_bin.1_k141_2140 | ShaoY_2019_ERR3405274_bin.1_k141_2140_6 | 3635 | 4033 | + | DUF6762 |
| peptidase | ShaoY_2019_ERR3405274_bin.1_k141_2140 | ShaoY_2019_ERR3405274_bin.1_k141_2140_7 | 4063 | 5868 | + | M03.UPB |
| TC | ShaoY_2019_ERR3405274_bin.1_k141_2140 | ShaoY_2019_ERR3405274_bin.1_k141_2140_8 | 6023 | 7000 | + | 9.B.104.1.3 |
| NULL(UNKNOWN) | ShaoY_2019_ERR3405274_bin.1_k141_2140 | ShaoY_2019_ERR3405274_bin.1_k141_2140_9 | 7022 | 7642 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| pfam | ShaoY_2019_ERR3405274_bin.1_k141_2140 | ShaoY_2019_ERR3405274_bin.1_k141_2140_10 | 7863 | 9209 | + | ELFV_dehydrog | ELFV_dehydrog_N |
| CAZyme | ShaoY_2019_ERR3405274_bin.1_k141_2140 | ShaoY_2019_ERR3405274_bin.1_k141_2140_11 | 9546 | 10937 | + | GT2 |
Gene ID: ShaoY_2019_ERR3405274_bin.1_k141_2140_2
Type: TC
Location: 619 - 1179 (+)
Type: TC
Location: 619 - 1179 (+)
Gene ID: ShaoY_2019_ERR3405274_bin.1_k141_2140_3
Type: TF
Location: 1244 - 1654 (+)
Type: TF
Location: 1244 - 1654 (+)
Gene ID: ShaoY_2019_ERR3405274_bin.1_k141_2140_4
Type: TC
Location: 1798 - 2592 (-)
Type: TC
Location: 1798 - 2592 (-)
Gene ID: ShaoY_2019_ERR3405274_bin.1_k141_2140_5
Type: TC
Location: 2621 - 3262 (-)
Type: TC
Location: 2621 - 3262 (-)
Gene ID: ShaoY_2019_ERR3405274_bin.1_k141_2140_6
Type: pfam
Location: 3635 - 4033 (+)
Type: pfam
Location: 3635 - 4033 (+)
Gene ID: ShaoY_2019_ERR3405274_bin.1_k141_2140_7
Type: peptidase
Location: 4063 - 5868 (+)
Type: peptidase
Location: 4063 - 5868 (+)
Gene ID: ShaoY_2019_ERR3405274_bin.1_k141_2140_8
Type: TC
Location: 6023 - 7000 (+)
Type: TC
Location: 6023 - 7000 (+)
Gene ID: ShaoY_2019_ERR3405274_bin.1_k141_2140_9
Type:
Location: 7022 - 7642 (+)
Type:
Location: 7022 - 7642 (+)
Gene ID: ShaoY_2019_ERR3405274_bin.1_k141_2140_10
Type: pfam
Location: 7863 - 9209 (+)
Type: pfam
Location: 7863 - 9209 (+)
Gene ID: ShaoY_2019_ERR3405274_bin.1_k141_2140_11
Type: CAZyme
Location: 9546 - 10937 (+)
Type: CAZyme
Location: 9546 - 10937 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Clostridiales
Family
Clostridiaceae
Genus
Clostridium
Species
Clostridium sp018372555
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.