Cluster: ShaoY_2019_ERR3405274_bin.1_CGC20
🧬 Cluster Details
- Gene Count: 9
- CAZyme Count: 1
- Substrate:
- Genome ID: ShaoY_2019_ERR3405274_bin.1
- CGC Family ID: CGCFAM_06046
- Continent: Europe
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | ShaoY_2019_ERR3405274_bin.1_k141_1607 | ShaoY_2019_ERR3405274_bin.1_k141_1607_21 | 21711 | 23729 | - | 1.B.52.2.2 |
| TC | ShaoY_2019_ERR3405274_bin.1_k141_1607 | ShaoY_2019_ERR3405274_bin.1_k141_1607_22 | 24126 | 24860 | - | 3.A.1.3.20 |
| TC | ShaoY_2019_ERR3405274_bin.1_k141_1607 | ShaoY_2019_ERR3405274_bin.1_k141_1607_23 | 24879 | 25646 | - | 3.A.1.3.20 |
| TC | ShaoY_2019_ERR3405274_bin.1_k141_1607 | ShaoY_2019_ERR3405274_bin.1_k141_1607_24 | 26095 | 26910 | - | 3.A.1.3.20 |
| TF | ShaoY_2019_ERR3405274_bin.1_k141_1607 | ShaoY_2019_ERR3405274_bin.1_k141_1607_25 | 27705 | 28517 | - | MerR |
| STP | ShaoY_2019_ERR3405274_bin.1_k141_1607 | ShaoY_2019_ERR3405274_bin.1_k141_1607_26 | 28592 | 29227 | - | GyrI-like |
| TC | ShaoY_2019_ERR3405274_bin.1_k141_1607 | ShaoY_2019_ERR3405274_bin.1_k141_1607_27 | 29455 | 29790 | - | 2.A.78.1.1 |
| TC | ShaoY_2019_ERR3405274_bin.1_k141_1607 | ShaoY_2019_ERR3405274_bin.1_k141_1607_28 | 29787 | 30503 | - | 2.A.78.1.1 |
| CAZyme | ShaoY_2019_ERR3405274_bin.1_k141_1607 | ShaoY_2019_ERR3405274_bin.1_k141_1607_29 | 31072 | 31884 | - | CE1 |
Gene ID: ShaoY_2019_ERR3405274_bin.1_k141_1607_21
Type: TC
Location: 21711 - 23729 (-)
Type: TC
Location: 21711 - 23729 (-)
Gene ID: ShaoY_2019_ERR3405274_bin.1_k141_1607_22
Type: TC
Location: 24126 - 24860 (-)
Type: TC
Location: 24126 - 24860 (-)
Gene ID: ShaoY_2019_ERR3405274_bin.1_k141_1607_23
Type: TC
Location: 24879 - 25646 (-)
Type: TC
Location: 24879 - 25646 (-)
Gene ID: ShaoY_2019_ERR3405274_bin.1_k141_1607_24
Type: TC
Location: 26095 - 26910 (-)
Type: TC
Location: 26095 - 26910 (-)
Gene ID: ShaoY_2019_ERR3405274_bin.1_k141_1607_25
Type: TF
Location: 27705 - 28517 (-)
Type: TF
Location: 27705 - 28517 (-)
Gene ID: ShaoY_2019_ERR3405274_bin.1_k141_1607_26
Type: STP
Location: 28592 - 29227 (-)
Type: STP
Location: 28592 - 29227 (-)
Gene ID: ShaoY_2019_ERR3405274_bin.1_k141_1607_27
Type: TC
Location: 29455 - 29790 (-)
Type: TC
Location: 29455 - 29790 (-)
Gene ID: ShaoY_2019_ERR3405274_bin.1_k141_1607_28
Type: TC
Location: 29787 - 30503 (-)
Type: TC
Location: 29787 - 30503 (-)
Gene ID: ShaoY_2019_ERR3405274_bin.1_k141_1607_29
Type: CAZyme
Location: 31072 - 31884 (-)
Type: CAZyme
Location: 31072 - 31884 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Clostridiales
Family
Clostridiaceae
Genus
Clostridium
Species
Clostridium sp018372555
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.