Cluster: ShaoY_2019_ERR3405274_bin.1_CGC19
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 1
- Substrate:
- Genome ID: ShaoY_2019_ERR3405274_bin.1
- Continent: Europe
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | ShaoY_2019_ERR3405274_bin.1_k141_1363 | ShaoY_2019_ERR3405274_bin.1_k141_1363_9 | 10531 | 11790 | - | 4.A.7.1.2 |
| TC | ShaoY_2019_ERR3405274_bin.1_k141_1363 | ShaoY_2019_ERR3405274_bin.1_k141_1363_10 | 11803 | 12078 | - | 4.A.7.1.2 |
| TF | ShaoY_2019_ERR3405274_bin.1_k141_1363 | ShaoY_2019_ERR3405274_bin.1_k141_1363_11 | 12109 | 14028 | - | HTH_DeoR | Mga |
| CAZyme | ShaoY_2019_ERR3405274_bin.1_k141_1363 | ShaoY_2019_ERR3405274_bin.1_k141_1363_12 | 14279 | 19315 | - | GH2 |
Gene ID: ShaoY_2019_ERR3405274_bin.1_k141_1363_9
Type: TC
Location: 10531 - 11790 (-)
Type: TC
Location: 10531 - 11790 (-)
Gene ID: ShaoY_2019_ERR3405274_bin.1_k141_1363_10
Type: TC
Location: 11803 - 12078 (-)
Type: TC
Location: 11803 - 12078 (-)
Gene ID: ShaoY_2019_ERR3405274_bin.1_k141_1363_11
Type: TF
Location: 12109 - 14028 (-)
Type: TF
Location: 12109 - 14028 (-)
Gene ID: ShaoY_2019_ERR3405274_bin.1_k141_1363_12
Type: CAZyme
Location: 14279 - 19315 (-)
Type: CAZyme
Location: 14279 - 19315 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Clostridiales
Family
Clostridiaceae
Genus
Clostridium
Species
Clostridium sp018372555
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.