Cluster: ShaoY_2019_ERR3405274_bin.1_CGC16
🧬 Cluster Details
- Gene Count: 9
- CAZyme Count: 3
- Substrate:
- Genome ID: ShaoY_2019_ERR3405274_bin.1
- CGC Family ID: CGCFAM_01825
- Continent: Europe
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | ShaoY_2019_ERR3405274_bin.1_k141_1002 | ShaoY_2019_ERR3405274_bin.1_k141_1002_2 | 1299 | 1889 | + | 2.A.107.1.2 |
| STP | ShaoY_2019_ERR3405274_bin.1_k141_1002 | ShaoY_2019_ERR3405274_bin.1_k141_1002_3 | 2255 | 3604 | + | Fer4 |
| CAZyme | ShaoY_2019_ERR3405274_bin.1_k141_1002 | ShaoY_2019_ERR3405274_bin.1_k141_1002_4 | 3734 | 5200 | - | GH1 |
| CAZyme | ShaoY_2019_ERR3405274_bin.1_k141_1002 | ShaoY_2019_ERR3405274_bin.1_k141_1002_5 | 5342 | 6448 | - | GH170 |
| TC | ShaoY_2019_ERR3405274_bin.1_k141_1002 | ShaoY_2019_ERR3405274_bin.1_k141_1002_6 | 6596 | 7894 | - | 4.A.3.2.2 |
| TC | ShaoY_2019_ERR3405274_bin.1_k141_1002 | ShaoY_2019_ERR3405274_bin.1_k141_1002_7 | 7907 | 8203 | - | 4.A.3.2.2 |
| TC | ShaoY_2019_ERR3405274_bin.1_k141_1002 | ShaoY_2019_ERR3405274_bin.1_k141_1002_8 | 8221 | 8532 | - | 4.A.3.2.7 |
| TF | ShaoY_2019_ERR3405274_bin.1_k141_1002 | ShaoY_2019_ERR3405274_bin.1_k141_1002_9 | 9113 | 11755 | - | TrmB |
| CAZyme | ShaoY_2019_ERR3405274_bin.1_k141_1002 | ShaoY_2019_ERR3405274_bin.1_k141_1002_10 | 12142 | 14061 | - | GT2 | GT2 |
Gene ID: ShaoY_2019_ERR3405274_bin.1_k141_1002_2
Type: TC
Location: 1299 - 1889 (+)
Type: TC
Location: 1299 - 1889 (+)
Gene ID: ShaoY_2019_ERR3405274_bin.1_k141_1002_3
Type: STP
Location: 2255 - 3604 (+)
Type: STP
Location: 2255 - 3604 (+)
Gene ID: ShaoY_2019_ERR3405274_bin.1_k141_1002_4
Type: CAZyme
Location: 3734 - 5200 (-)
Type: CAZyme
Location: 3734 - 5200 (-)
Gene ID: ShaoY_2019_ERR3405274_bin.1_k141_1002_5
Type: CAZyme
Location: 5342 - 6448 (-)
Type: CAZyme
Location: 5342 - 6448 (-)
Gene ID: ShaoY_2019_ERR3405274_bin.1_k141_1002_6
Type: TC
Location: 6596 - 7894 (-)
Type: TC
Location: 6596 - 7894 (-)
Gene ID: ShaoY_2019_ERR3405274_bin.1_k141_1002_7
Type: TC
Location: 7907 - 8203 (-)
Type: TC
Location: 7907 - 8203 (-)
Gene ID: ShaoY_2019_ERR3405274_bin.1_k141_1002_8
Type: TC
Location: 8221 - 8532 (-)
Type: TC
Location: 8221 - 8532 (-)
Gene ID: ShaoY_2019_ERR3405274_bin.1_k141_1002_9
Type: TF
Location: 9113 - 11755 (-)
Type: TF
Location: 9113 - 11755 (-)
Gene ID: ShaoY_2019_ERR3405274_bin.1_k141_1002_10
Type: CAZyme
Location: 12142 - 14061 (-)
Type: CAZyme
Location: 12142 - 14061 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Clostridiales
Family
Clostridiaceae
Genus
Clostridium
Species
Clostridium sp018372555
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.