Cluster: ShaoY_2019_ERR3405274_bin.1_CGC13
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 1
- Substrate:
- Genome ID: ShaoY_2019_ERR3405274_bin.1
- CGC Family ID: CGCFAM_08830
- Continent: Europe
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | ShaoY_2019_ERR3405274_bin.1_k141_871 | ShaoY_2019_ERR3405274_bin.1_k141_871_35 | 42332 | 42799 | + | 4.A.1.1.6 |
| TC | ShaoY_2019_ERR3405274_bin.1_k141_871 | ShaoY_2019_ERR3405274_bin.1_k141_871_36 | 43442 | 44575 | + | 3.A.1.12.4 |
| TC | ShaoY_2019_ERR3405274_bin.1_k141_871 | ShaoY_2019_ERR3405274_bin.1_k141_871_37 | 44565 | 46160 | + | 3.A.1.12.8 |
| pfam | ShaoY_2019_ERR3405274_bin.1_k141_871 | ShaoY_2019_ERR3405274_bin.1_k141_871_38 | 46571 | 47167 | + | AAA_28 |
| CAZyme | ShaoY_2019_ERR3405274_bin.1_k141_871 | ShaoY_2019_ERR3405274_bin.1_k141_871_39 | 47421 | 49961 | + | GH3 |
Gene ID: ShaoY_2019_ERR3405274_bin.1_k141_871_35
Type: TC
Location: 42332 - 42799 (+)
Type: TC
Location: 42332 - 42799 (+)
Gene ID: ShaoY_2019_ERR3405274_bin.1_k141_871_36
Type: TC
Location: 43442 - 44575 (+)
Type: TC
Location: 43442 - 44575 (+)
Gene ID: ShaoY_2019_ERR3405274_bin.1_k141_871_37
Type: TC
Location: 44565 - 46160 (+)
Type: TC
Location: 44565 - 46160 (+)
Gene ID: ShaoY_2019_ERR3405274_bin.1_k141_871_38
Type: pfam
Location: 46571 - 47167 (+)
Type: pfam
Location: 46571 - 47167 (+)
Gene ID: ShaoY_2019_ERR3405274_bin.1_k141_871_39
Type: CAZyme
Location: 47421 - 49961 (+)
Type: CAZyme
Location: 47421 - 49961 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Clostridiales
Family
Clostridiaceae
Genus
Clostridium
Species
Clostridium sp018372555
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.