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Cluster: ShaoY_2019_ERR3405274_bin.1_CGC11

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC ShaoY_2019_ERR3405274_bin.1_k141_869 ShaoY_2019_ERR3405274_bin.1_k141_869_15 13945 15195 + 2.A.49.9.2
CAZyme ShaoY_2019_ERR3405274_bin.1_k141_869 ShaoY_2019_ERR3405274_bin.1_k141_869_16 15267 16877 + GH20
CAZyme ShaoY_2019_ERR3405274_bin.1_k141_869 ShaoY_2019_ERR3405274_bin.1_k141_869_17 17256 23474 + CBM32 | GH36
pfam ShaoY_2019_ERR3405274_bin.1_k141_869 ShaoY_2019_ERR3405274_bin.1_k141_869_18 23888 24544 + TENA_THI-4
NULL(UNKNOWN) ShaoY_2019_ERR3405274_bin.1_k141_869 ShaoY_2019_ERR3405274_bin.1_k141_869_19 24617 24859 + NULL(UNKNOWN)
[View Structural Homologs]
TC ShaoY_2019_ERR3405274_bin.1_k141_869 ShaoY_2019_ERR3405274_bin.1_k141_869_20 25139 26191 + 2.A.20.1.5
Gene ID: ShaoY_2019_ERR3405274_bin.1_k141_869_15
Type: TC
Location: 13945 - 15195 (+)
Gene ID: ShaoY_2019_ERR3405274_bin.1_k141_869_16
Type: CAZyme
Location: 15267 - 16877 (+)
Gene ID: ShaoY_2019_ERR3405274_bin.1_k141_869_17
Type: CAZyme
Location: 17256 - 23474 (+)
Gene ID: ShaoY_2019_ERR3405274_bin.1_k141_869_18
Type: pfam
Location: 23888 - 24544 (+)
Gene ID: ShaoY_2019_ERR3405274_bin.1_k141_869_19
Type:
Location: 24617 - 24859 (+)
Gene ID: ShaoY_2019_ERR3405274_bin.1_k141_869_20
Type: TC
Location: 25139 - 26191 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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