Cluster: ShaoY_2019_ERR3405274_bin.1_CGC1
🧬 Cluster Details
- Gene Count: 11
- CAZyme Count: 1
- Substrate:
- Genome ID: ShaoY_2019_ERR3405274_bin.1
- CGC Family ID: CGCFAM_05891
- Continent: Europe
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | ShaoY_2019_ERR3405274_bin.1_k141_190 | ShaoY_2019_ERR3405274_bin.1_k141_190_4 | 2137 | 3459 | + | 2.A.66.1.37 |
| NULL(UNKNOWN) | ShaoY_2019_ERR3405274_bin.1_k141_190 | ShaoY_2019_ERR3405274_bin.1_k141_190_5 | 3593 | 3880 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| NULL(UNKNOWN) | ShaoY_2019_ERR3405274_bin.1_k141_190 | ShaoY_2019_ERR3405274_bin.1_k141_190_6 | 4288 | 5112 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | ShaoY_2019_ERR3405274_bin.1_k141_190 | ShaoY_2019_ERR3405274_bin.1_k141_190_7 | 5164 | 8316 | + | GH136 |
| NULL(UNKNOWN) | ShaoY_2019_ERR3405274_bin.1_k141_190 | ShaoY_2019_ERR3405274_bin.1_k141_190_8 | 8628 | 8873 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | ShaoY_2019_ERR3405274_bin.1_k141_190 | ShaoY_2019_ERR3405274_bin.1_k141_190_9 | 9082 | 10692 | - | 3.A.1.121.4 |
| TC | ShaoY_2019_ERR3405274_bin.1_k141_190 | ShaoY_2019_ERR3405274_bin.1_k141_190_10 | 11169 | 12479 | + | 2.A.22.5.2 |
| TF | ShaoY_2019_ERR3405274_bin.1_k141_190 | ShaoY_2019_ERR3405274_bin.1_k141_190_11 | 12772 | 13134 | + | GntR |
| TC | ShaoY_2019_ERR3405274_bin.1_k141_190 | ShaoY_2019_ERR3405274_bin.1_k141_190_12 | 13138 | 14013 | + | 3.A.1.132.6 |
| NULL(UNKNOWN) | ShaoY_2019_ERR3405274_bin.1_k141_190 | ShaoY_2019_ERR3405274_bin.1_k141_190_13 | 14013 | 14756 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | ShaoY_2019_ERR3405274_bin.1_k141_190 | ShaoY_2019_ERR3405274_bin.1_k141_190_14 | 14975 | 15622 | - | 1.C.113.1.3 |
Gene ID: ShaoY_2019_ERR3405274_bin.1_k141_190_4
Type: TC
Location: 2137 - 3459 (+)
Type: TC
Location: 2137 - 3459 (+)
Gene ID: ShaoY_2019_ERR3405274_bin.1_k141_190_5
Type:
Location: 3593 - 3880 (+)
Type:
Location: 3593 - 3880 (+)
Gene ID: ShaoY_2019_ERR3405274_bin.1_k141_190_6
Type:
Location: 4288 - 5112 (+)
Type:
Location: 4288 - 5112 (+)
Gene ID: ShaoY_2019_ERR3405274_bin.1_k141_190_7
Type: CAZyme
Location: 5164 - 8316 (+)
Type: CAZyme
Location: 5164 - 8316 (+)
Gene ID: ShaoY_2019_ERR3405274_bin.1_k141_190_8
Type:
Location: 8628 - 8873 (+)
Type:
Location: 8628 - 8873 (+)
Gene ID: ShaoY_2019_ERR3405274_bin.1_k141_190_9
Type: TC
Location: 9082 - 10692 (-)
Type: TC
Location: 9082 - 10692 (-)
Gene ID: ShaoY_2019_ERR3405274_bin.1_k141_190_10
Type: TC
Location: 11169 - 12479 (+)
Type: TC
Location: 11169 - 12479 (+)
Gene ID: ShaoY_2019_ERR3405274_bin.1_k141_190_11
Type: TF
Location: 12772 - 13134 (+)
Type: TF
Location: 12772 - 13134 (+)
Gene ID: ShaoY_2019_ERR3405274_bin.1_k141_190_12
Type: TC
Location: 13138 - 14013 (+)
Type: TC
Location: 13138 - 14013 (+)
Gene ID: ShaoY_2019_ERR3405274_bin.1_k141_190_13
Type:
Location: 14013 - 14756 (+)
Type:
Location: 14013 - 14756 (+)
Gene ID: ShaoY_2019_ERR3405274_bin.1_k141_190_14
Type: TC
Location: 14975 - 15622 (-)
Type: TC
Location: 14975 - 15622 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Clostridiales
Family
Clostridiaceae
Genus
Clostridium
Species
Clostridium sp018372555
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.