Cluster: ShaoY_2019_ERR3405052_bin.2_CGC23
🧬 Cluster Details
- Gene Count: 8
- CAZyme Count: 2
- Substrate:
- Genome ID: ShaoY_2019_ERR3405052_bin.2
- Continent: Europe
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | ShaoY_2019_ERR3405052_bin.2_k141_622 | ShaoY_2019_ERR3405052_bin.2_k141_622_93 | 81931 | 82872 | + | 2.A.115.1.1 |
| TF | ShaoY_2019_ERR3405052_bin.2_k141_622 | ShaoY_2019_ERR3405052_bin.2_k141_622_94 | 82935 | 83921 | - | LacI |
| NULL(UNKNOWN) | ShaoY_2019_ERR3405052_bin.2_k141_622 | ShaoY_2019_ERR3405052_bin.2_k141_622_95 | 83931 | 84731 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | ShaoY_2019_ERR3405052_bin.2_k141_622 | ShaoY_2019_ERR3405052_bin.2_k141_622_96 | 85039 | 85881 | - | 3.A.1.1.26 |
| TC | ShaoY_2019_ERR3405052_bin.2_k141_622 | ShaoY_2019_ERR3405052_bin.2_k141_622_97 | 85883 | 87172 | - | 3.A.1.1.26 |
| TC | ShaoY_2019_ERR3405052_bin.2_k141_622 | ShaoY_2019_ERR3405052_bin.2_k141_622_98 | 87296 | 88567 | - | 3.A.1.1.26 |
| CAZyme | ShaoY_2019_ERR3405052_bin.2_k141_622 | ShaoY_2019_ERR3405052_bin.2_k141_622_99 | 88983 | 90500 | + | GH77 |
| CAZyme | ShaoY_2019_ERR3405052_bin.2_k141_622 | ShaoY_2019_ERR3405052_bin.2_k141_622_100 | 90523 | 92781 | + | GT35 |
Gene ID: ShaoY_2019_ERR3405052_bin.2_k141_622_93
Type: TC
Location: 81931 - 82872 (+)
Type: TC
Location: 81931 - 82872 (+)
Gene ID: ShaoY_2019_ERR3405052_bin.2_k141_622_94
Type: TF
Location: 82935 - 83921 (-)
Type: TF
Location: 82935 - 83921 (-)
Gene ID: ShaoY_2019_ERR3405052_bin.2_k141_622_95
Type:
Location: 83931 - 84731 (-)
Type:
Location: 83931 - 84731 (-)
Gene ID: ShaoY_2019_ERR3405052_bin.2_k141_622_96
Type: TC
Location: 85039 - 85881 (-)
Type: TC
Location: 85039 - 85881 (-)
Gene ID: ShaoY_2019_ERR3405052_bin.2_k141_622_97
Type: TC
Location: 85883 - 87172 (-)
Type: TC
Location: 85883 - 87172 (-)
Gene ID: ShaoY_2019_ERR3405052_bin.2_k141_622_98
Type: TC
Location: 87296 - 88567 (-)
Type: TC
Location: 87296 - 88567 (-)
Gene ID: ShaoY_2019_ERR3405052_bin.2_k141_622_99
Type: CAZyme
Location: 88983 - 90500 (+)
Type: CAZyme
Location: 88983 - 90500 (+)
Gene ID: ShaoY_2019_ERR3405052_bin.2_k141_622_100
Type: CAZyme
Location: 90523 - 92781 (+)
Type: CAZyme
Location: 90523 - 92781 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota
Class
Bacilli
Order
Lactobacillales
Family
Streptococcaceae
Genus
Streptococcus
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.