Cluster: ShaoY_2019_ERR3405052_bin.2_CGC12
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 2
- Substrate: alpha-glucan
- Genome ID: ShaoY_2019_ERR3405052_bin.2
- CGC Family ID: CGCFAM_00160
- Continent: Europe
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | ShaoY_2019_ERR3405052_bin.2_k141_517 | ShaoY_2019_ERR3405052_bin.2_k141_517_41 | 34290 | 39623 | - | GH95 |
| TF | ShaoY_2019_ERR3405052_bin.2_k141_517 | ShaoY_2019_ERR3405052_bin.2_k141_517_42 | 40041 | 40748 | - | GntR |
| TC | ShaoY_2019_ERR3405052_bin.2_k141_517 | ShaoY_2019_ERR3405052_bin.2_k141_517_43 | 40936 | 42942 | + | 4.A.1.2.13 |
| CAZyme | ShaoY_2019_ERR3405052_bin.2_k141_517 | ShaoY_2019_ERR3405052_bin.2_k141_517_44 | 43154 | 44779 | + | GH13_29 |
Gene ID: ShaoY_2019_ERR3405052_bin.2_k141_517_41
Type: CAZyme
Location: 34290 - 39623 (-)
Type: CAZyme
Location: 34290 - 39623 (-)
Gene ID: ShaoY_2019_ERR3405052_bin.2_k141_517_42
Type: TF
Location: 40041 - 40748 (-)
Type: TF
Location: 40041 - 40748 (-)
Gene ID: ShaoY_2019_ERR3405052_bin.2_k141_517_43
Type: TC
Location: 40936 - 42942 (+)
Type: TC
Location: 40936 - 42942 (+)
Gene ID: ShaoY_2019_ERR3405052_bin.2_k141_517_44
Type: CAZyme
Location: 43154 - 44779 (+)
Type: CAZyme
Location: 43154 - 44779 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota
Class
Bacilli
Order
Lactobacillales
Family
Streptococcaceae
Genus
Streptococcus
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.