Cluster: ShaoY_2019_ERR3405000_bin.13_CGC4

🧬 Cluster Details

Gene Type	Contig ID	Protein ID	Start	Stop	Direction	Protein Family
CAZyme	ShaoY_2019_ERR3405000_bin.13_k141_1625	ShaoY_2019_ERR3405000_bin.13_k141_1625_146	153552	154775	+	GT111
CAZyme	ShaoY_2019_ERR3405000_bin.13_k141_1625	ShaoY_2019_ERR3405000_bin.13_k141_1625_147	154851	157250	+	GT2 \| GT2
pfam	ShaoY_2019_ERR3405000_bin.13_k141_1625	ShaoY_2019_ERR3405000_bin.13_k141_1625_148	157329	159512	-	DUF7654 \| DUF7657
pfam	ShaoY_2019_ERR3405000_bin.13_k141_1625	ShaoY_2019_ERR3405000_bin.13_k141_1625_149	159539	159895	-	DUF2304
CAZyme	ShaoY_2019_ERR3405000_bin.13_k141_1625	ShaoY_2019_ERR3405000_bin.13_k141_1625_150	159895	160605	-	GT2
pfam	ShaoY_2019_ERR3405000_bin.13_k141_1625	ShaoY_2019_ERR3405000_bin.13_k141_1625_151	161873	163048	-	Epimerase_2
CAZyme	ShaoY_2019_ERR3405000_bin.13_k141_1625	ShaoY_2019_ERR3405000_bin.13_k141_1625_152	163069	164187	-	GT4
pfam	ShaoY_2019_ERR3405000_bin.13_k141_1625	ShaoY_2019_ERR3405000_bin.13_k141_1625_153	164193	165410	-	Epimerase \| Polysacc_synt_C
TC	ShaoY_2019_ERR3405000_bin.13_k141_1625	ShaoY_2019_ERR3405000_bin.13_k141_1625_154	165412	166434	-	9.B.18.2.1
NULL(UNKNOWN)	ShaoY_2019_ERR3405000_bin.13_k141_1625	ShaoY_2019_ERR3405000_bin.13_k141_1625_155	166719	167783	-	NULL(UNKNOWN) [View Structural Homologs]
CAZyme	ShaoY_2019_ERR3405000_bin.13_k141_1625	ShaoY_2019_ERR3405000_bin.13_k141_1625_156	167957	170737	-	GH73

Gene ID: ShaoY_2019_ERR3405000_bin.13_k141_1625_146
Type: CAZyme
Location: 153552 - 154775 (+)

Gene ID: ShaoY_2019_ERR3405000_bin.13_k141_1625_147
Type: CAZyme
Location: 154851 - 157250 (+)

Gene ID: ShaoY_2019_ERR3405000_bin.13_k141_1625_148
Type: pfam
Location: 157329 - 159512 (-)

Gene ID: ShaoY_2019_ERR3405000_bin.13_k141_1625_149
Type: pfam
Location: 159539 - 159895 (-)

Gene ID: ShaoY_2019_ERR3405000_bin.13_k141_1625_150
Type: CAZyme
Location: 159895 - 160605 (-)

Gene ID: ShaoY_2019_ERR3405000_bin.13_k141_1625_151
Type: pfam
Location: 161873 - 163048 (-)

Gene ID: ShaoY_2019_ERR3405000_bin.13_k141_1625_152
Type: CAZyme
Location: 163069 - 164187 (-)

Gene ID: ShaoY_2019_ERR3405000_bin.13_k141_1625_153
Type: pfam
Location: 164193 - 165410 (-)

Gene ID: ShaoY_2019_ERR3405000_bin.13_k141_1625_154
Type: TC
Location: 165412 - 166434 (-)

Gene ID: ShaoY_2019_ERR3405000_bin.13_k141_1625_155
Type:
Location: 166719 - 167783 (-)

Gene ID: ShaoY_2019_ERR3405000_bin.13_k141_1625_156
Type: CAZyme
Location: 167957 - 170737 (-)

Taxonomic Lineage

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Gene Level Read Mapping

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Gene ID	Condition Pair	log2FC	FDR P-value
ShaoY_2019_ERR3405000_bin.13_k141_1625_146	vegan > omnivore	1.22904	0.01560
ShaoY_2019_ERR3405000_bin.13_k141_1625_146	vegetarian > omnivore	1.97915	0.03761
ShaoY_2019_ERR3405000_bin.13_k141_1625_147	vegan > omnivore	2.59015	0.01560
ShaoY_2019_ERR3405000_bin.13_k141_1625_147	vegetarian > omnivore	3.13657	0.03761
ShaoY_2019_ERR3405000_bin.13_k141_1625_149	vegan > omnivore	1.36930	0.01560
ShaoY_2019_ERR3405000_bin.13_k141_1625_149	vegetarian > omnivore	1.78791	0.03761
ShaoY_2019_ERR3405000_bin.13_k141_1625_150	vegan > omnivore	1.47075	0.01560
ShaoY_2019_ERR3405000_bin.13_k141_1625_150	vegetarian > omnivore	2.46003	0.03761
ShaoY_2019_ERR3405000_bin.13_k141_1625_153	vegetarian > omnivore	1.25492	0.03761
ShaoY_2019_ERR3405000_bin.13_k141_1625_153	vegetarian > vegan	1.81100	0.01054
ShaoY_2019_ERR3405000_bin.13_k141_1625_155	vegan > omnivore	1.33651	0.01560
ShaoY_2019_ERR3405000_bin.13_k141_1625_155	vegetarian > omnivore	2.26471	0.03761
ShaoY_2019_ERR3405000_bin.13_k141_1625_156	vegan > omnivore	1.61022	0.01560
ShaoY_2019_ERR3405000_bin.13_k141_1625_156	vegetarian > omnivore	2.23620	0.03761