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Cluster: ShaoY_2019_ERR3404980_bin.1_CGC9

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC ShaoY_2019_ERR3404980_bin.1_k141_2671 ShaoY_2019_ERR3404980_bin.1_k141_2671_22 25258 25596 - 4.A.3.1.2
TF ShaoY_2019_ERR3404980_bin.1_k141_2671 ShaoY_2019_ERR3404980_bin.1_k141_2671_23 25811 26815 - LacI
TC ShaoY_2019_ERR3404980_bin.1_k141_2671 ShaoY_2019_ERR3404980_bin.1_k141_2671_24 27173 28939 + 4.A.3.1.1
CAZyme ShaoY_2019_ERR3404980_bin.1_k141_2671 ShaoY_2019_ERR3404980_bin.1_k141_2671_25 29006 30445 + GH1
TF ShaoY_2019_ERR3404980_bin.1_k141_2671 ShaoY_2019_ERR3404980_bin.1_k141_2671_26 30713 31750 - LacI
CAZyme ShaoY_2019_ERR3404980_bin.1_k141_2671 ShaoY_2019_ERR3404980_bin.1_k141_2671_27 32092 33534 + GH1
TC ShaoY_2019_ERR3404980_bin.1_k141_2671 ShaoY_2019_ERR3404980_bin.1_k141_2671_28 33711 35471 + 4.A.3.1.1
TF ShaoY_2019_ERR3404980_bin.1_k141_2671 ShaoY_2019_ERR3404980_bin.1_k141_2671_29 35884 36894 - LacI
TC ShaoY_2019_ERR3404980_bin.1_k141_2671 ShaoY_2019_ERR3404980_bin.1_k141_2671_30 37170 38948 + 4.A.3.1.1
CAZyme ShaoY_2019_ERR3404980_bin.1_k141_2671 ShaoY_2019_ERR3404980_bin.1_k141_2671_31 39025 40446 + GH1
Gene ID: ShaoY_2019_ERR3404980_bin.1_k141_2671_22
Type: TC
Location: 25258 - 25596 (-)
Gene ID: ShaoY_2019_ERR3404980_bin.1_k141_2671_23
Type: TF
Location: 25811 - 26815 (-)
Gene ID: ShaoY_2019_ERR3404980_bin.1_k141_2671_24
Type: TC
Location: 27173 - 28939 (+)
Gene ID: ShaoY_2019_ERR3404980_bin.1_k141_2671_25
Type: CAZyme
Location: 29006 - 30445 (+)
Gene ID: ShaoY_2019_ERR3404980_bin.1_k141_2671_26
Type: TF
Location: 30713 - 31750 (-)
Gene ID: ShaoY_2019_ERR3404980_bin.1_k141_2671_27
Type: CAZyme
Location: 32092 - 33534 (+)
Gene ID: ShaoY_2019_ERR3404980_bin.1_k141_2671_28
Type: TC
Location: 33711 - 35471 (+)
Gene ID: ShaoY_2019_ERR3404980_bin.1_k141_2671_29
Type: TF
Location: 35884 - 36894 (-)
Gene ID: ShaoY_2019_ERR3404980_bin.1_k141_2671_30
Type: TC
Location: 37170 - 38948 (+)
Gene ID: ShaoY_2019_ERR3404980_bin.1_k141_2671_31
Type: CAZyme
Location: 39025 - 40446 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
ShaoY_2019_ERR3404980_bin.1_k141_2671_26 vegetarian > omnivore 1.03636 0.02242

🧭 Explore Read Mapping of CGC

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