Cluster: ShaoY_2019_ERR3404980_bin.1_CGC6
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 1
- Substrate:
- Genome ID: ShaoY_2019_ERR3404980_bin.1
- Continent: Europe
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | ShaoY_2019_ERR3404980_bin.1_k141_1545 | ShaoY_2019_ERR3404980_bin.1_k141_1545_107 | 142978 | 143304 | + | 4.A.3.2.7 |
| TC | ShaoY_2019_ERR3404980_bin.1_k141_1545 | ShaoY_2019_ERR3404980_bin.1_k141_1545_108 | 143351 | 143644 | + | 4.A.3.2.6 |
| TC | ShaoY_2019_ERR3404980_bin.1_k141_1545 | ShaoY_2019_ERR3404980_bin.1_k141_1545_109 | 143654 | 145003 | + | 4.A.3.2.6 |
| CAZyme | ShaoY_2019_ERR3404980_bin.1_k141_1545 | ShaoY_2019_ERR3404980_bin.1_k141_1545_110 | 145005 | 146459 | + | GH1 |
Gene ID: ShaoY_2019_ERR3404980_bin.1_k141_1545_107
Type: TC
Location: 142978 - 143304 (+)
Type: TC
Location: 142978 - 143304 (+)
Gene ID: ShaoY_2019_ERR3404980_bin.1_k141_1545_108
Type: TC
Location: 143351 - 143644 (+)
Type: TC
Location: 143351 - 143644 (+)
Gene ID: ShaoY_2019_ERR3404980_bin.1_k141_1545_109
Type: TC
Location: 143654 - 145003 (+)
Type: TC
Location: 143654 - 145003 (+)
Gene ID: ShaoY_2019_ERR3404980_bin.1_k141_1545_110
Type: CAZyme
Location: 145005 - 146459 (+)
Type: CAZyme
Location: 145005 - 146459 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Species
Collinsella sp900541745
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| ShaoY_2019_ERR3404980_bin.1_k141_1545_107 | vegetarian > vegan | 1.35334 | 0.00364 |
| ShaoY_2019_ERR3404980_bin.1_k141_1545_108 | vegetarian > vegan | 2.10943 | 0.00364 |
| ShaoY_2019_ERR3404980_bin.1_k141_1545_109 | vegetarian > vegan | 1.85208 | 0.00364 |
| ShaoY_2019_ERR3404980_bin.1_k141_1545_110 | vegetarian > vegan | 2.03121 | 0.00364 |