Cluster: ShaoY_2019_ERR3404980_bin.1_CGC5
🧬 Cluster Details
- Gene Count: 8
- CAZyme Count: 1
- Substrate:
- Genome ID: ShaoY_2019_ERR3404980_bin.1
- Continent: Europe
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | ShaoY_2019_ERR3404980_bin.1_k141_1545 | ShaoY_2019_ERR3404980_bin.1_k141_1545_77 | 100960 | 101448 | + | 4.A.6.1.16 |
| TC | ShaoY_2019_ERR3404980_bin.1_k141_1545 | ShaoY_2019_ERR3404980_bin.1_k141_1545_78 | 101464 | 102237 | + | 4.A.6.1.13 |
| TC | ShaoY_2019_ERR3404980_bin.1_k141_1545 | ShaoY_2019_ERR3404980_bin.1_k141_1545_79 | 102230 | 103090 | + | 4.A.6.1.13 |
| pfam | ShaoY_2019_ERR3404980_bin.1_k141_1545 | ShaoY_2019_ERR3404980_bin.1_k141_1545_80 | 103124 | 103528 | + | EIIA-man |
| CAZyme | ShaoY_2019_ERR3404980_bin.1_k141_1545 | ShaoY_2019_ERR3404980_bin.1_k141_1545_81 | 103574 | 105010 | + | GH32 |
| pfam | ShaoY_2019_ERR3404980_bin.1_k141_1545 | ShaoY_2019_ERR3404980_bin.1_k141_1545_82 | 105559 | 108312 | + | Sigma54_activat | PRD | EIIA-man |
| TF | ShaoY_2019_ERR3404980_bin.1_k141_1545 | ShaoY_2019_ERR3404980_bin.1_k141_1545_83 | 108567 | 109301 | + | GntR |
| TC | ShaoY_2019_ERR3404980_bin.1_k141_1545 | ShaoY_2019_ERR3404980_bin.1_k141_1545_84 | 109499 | 110962 | + | 2.A.118.1.2 |
Gene ID: ShaoY_2019_ERR3404980_bin.1_k141_1545_77
Type: TC
Location: 100960 - 101448 (+)
Type: TC
Location: 100960 - 101448 (+)
Gene ID: ShaoY_2019_ERR3404980_bin.1_k141_1545_78
Type: TC
Location: 101464 - 102237 (+)
Type: TC
Location: 101464 - 102237 (+)
Gene ID: ShaoY_2019_ERR3404980_bin.1_k141_1545_79
Type: TC
Location: 102230 - 103090 (+)
Type: TC
Location: 102230 - 103090 (+)
Gene ID: ShaoY_2019_ERR3404980_bin.1_k141_1545_80
Type: pfam
Location: 103124 - 103528 (+)
Type: pfam
Location: 103124 - 103528 (+)
Gene ID: ShaoY_2019_ERR3404980_bin.1_k141_1545_81
Type: CAZyme
Location: 103574 - 105010 (+)
Type: CAZyme
Location: 103574 - 105010 (+)
Gene ID: ShaoY_2019_ERR3404980_bin.1_k141_1545_82
Type: pfam
Location: 105559 - 108312 (+)
Type: pfam
Location: 105559 - 108312 (+)
Gene ID: ShaoY_2019_ERR3404980_bin.1_k141_1545_83
Type: TF
Location: 108567 - 109301 (+)
Type: TF
Location: 108567 - 109301 (+)
Gene ID: ShaoY_2019_ERR3404980_bin.1_k141_1545_84
Type: TC
Location: 109499 - 110962 (+)
Type: TC
Location: 109499 - 110962 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Species
Collinsella sp900541745
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| ShaoY_2019_ERR3404980_bin.1_k141_1545_83 | vegan > omnivore | 1.64406 | 0.00861 |