Cluster: ShaoY_2019_ERR3404980_bin.1_CGC3
🧬 Cluster Details
- Gene Count: 10
- CAZyme Count: 6
- Substrate:
- Genome ID: ShaoY_2019_ERR3404980_bin.1
- CGC Family ID: CGCFAM_00011
- Continent: Europe
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | ShaoY_2019_ERR3404980_bin.1_k141_1041 | ShaoY_2019_ERR3404980_bin.1_k141_1041_110 | 138150 | 138992 | - | 3.A.1.103.1 |
| CAZyme | ShaoY_2019_ERR3404980_bin.1_k141_1041 | ShaoY_2019_ERR3404980_bin.1_k141_1041_111 | 139115 | 140077 | + | GT81 |
| NULL(UNKNOWN) | ShaoY_2019_ERR3404980_bin.1_k141_1041 | ShaoY_2019_ERR3404980_bin.1_k141_1041_112 | 140019 | 140660 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | ShaoY_2019_ERR3404980_bin.1_k141_1041 | ShaoY_2019_ERR3404980_bin.1_k141_1041_113 | 140686 | 141921 | - | GT4 |
| CAZyme | ShaoY_2019_ERR3404980_bin.1_k141_1041 | ShaoY_2019_ERR3404980_bin.1_k141_1041_114 | 141943 | 143004 | - | GT2 |
| CAZyme | ShaoY_2019_ERR3404980_bin.1_k141_1041 | ShaoY_2019_ERR3404980_bin.1_k141_1041_115 | 143044 | 144300 | - | GT2 |
| TC | ShaoY_2019_ERR3404980_bin.1_k141_1041 | ShaoY_2019_ERR3404980_bin.1_k141_1041_116 | 144302 | 145057 | - | 3.A.1.103.1 |
| TC | ShaoY_2019_ERR3404980_bin.1_k141_1041 | ShaoY_2019_ERR3404980_bin.1_k141_1041_117 | 145067 | 145879 | - | 3.A.1.103.4 |
| CAZyme | ShaoY_2019_ERR3404980_bin.1_k141_1041 | ShaoY_2019_ERR3404980_bin.1_k141_1041_118 | 146150 | 147286 | - | GT2 |
| CAZyme | ShaoY_2019_ERR3404980_bin.1_k141_1041 | ShaoY_2019_ERR3404980_bin.1_k141_1041_119 | 147481 | 149472 | + | GT2 |
Gene ID: ShaoY_2019_ERR3404980_bin.1_k141_1041_110
Type: TC
Location: 138150 - 138992 (-)
Type: TC
Location: 138150 - 138992 (-)
Gene ID: ShaoY_2019_ERR3404980_bin.1_k141_1041_111
Type: CAZyme
Location: 139115 - 140077 (+)
Type: CAZyme
Location: 139115 - 140077 (+)
Gene ID: ShaoY_2019_ERR3404980_bin.1_k141_1041_112
Type:
Location: 140019 - 140660 (+)
Type:
Location: 140019 - 140660 (+)
Gene ID: ShaoY_2019_ERR3404980_bin.1_k141_1041_113
Type: CAZyme
Location: 140686 - 141921 (-)
Type: CAZyme
Location: 140686 - 141921 (-)
Gene ID: ShaoY_2019_ERR3404980_bin.1_k141_1041_114
Type: CAZyme
Location: 141943 - 143004 (-)
Type: CAZyme
Location: 141943 - 143004 (-)
Gene ID: ShaoY_2019_ERR3404980_bin.1_k141_1041_115
Type: CAZyme
Location: 143044 - 144300 (-)
Type: CAZyme
Location: 143044 - 144300 (-)
Gene ID: ShaoY_2019_ERR3404980_bin.1_k141_1041_116
Type: TC
Location: 144302 - 145057 (-)
Type: TC
Location: 144302 - 145057 (-)
Gene ID: ShaoY_2019_ERR3404980_bin.1_k141_1041_117
Type: TC
Location: 145067 - 145879 (-)
Type: TC
Location: 145067 - 145879 (-)
Gene ID: ShaoY_2019_ERR3404980_bin.1_k141_1041_118
Type: CAZyme
Location: 146150 - 147286 (-)
Type: CAZyme
Location: 146150 - 147286 (-)
Gene ID: ShaoY_2019_ERR3404980_bin.1_k141_1041_119
Type: CAZyme
Location: 147481 - 149472 (+)
Type: CAZyme
Location: 147481 - 149472 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Species
Collinsella sp900541745
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| ShaoY_2019_ERR3404980_bin.1_k141_1041_113 | vegetarian > vegan | 3.55383 | 0.00364 |
| ShaoY_2019_ERR3404980_bin.1_k141_1041_114 | vegetarian > vegan | 6.01271 | 0.00364 |
| ShaoY_2019_ERR3404980_bin.1_k141_1041_116 | vegetarian > vegan | 1.23851 | 0.00364 |
| ShaoY_2019_ERR3404980_bin.1_k141_1041_117 | vegetarian > vegan | 2.57940 | 0.00364 |
| ShaoY_2019_ERR3404980_bin.1_k141_1041_118 | vegetarian > vegan | 2.26187 | 0.00364 |