Cluster: ShaoY_2019_ERR3404980_bin.1_CGC17
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 1
- Substrate:
- Genome ID: ShaoY_2019_ERR3404980_bin.1
- CGC Family ID: CGCFAM_00467
- Continent: Europe
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | ShaoY_2019_ERR3404980_bin.1_k141_4399 | ShaoY_2019_ERR3404980_bin.1_k141_4399_172 | 199019 | 200395 | - | GH13_20 |
| TC | ShaoY_2019_ERR3404980_bin.1_k141_4399 | ShaoY_2019_ERR3404980_bin.1_k141_4399_173 | 200549 | 201745 | - | 2.A.1.2.18 |
| TC | ShaoY_2019_ERR3404980_bin.1_k141_4399 | ShaoY_2019_ERR3404980_bin.1_k141_4399_174 | 201866 | 204226 | - | 9.A.8.1.6 |
| pfam | ShaoY_2019_ERR3404980_bin.1_k141_4399 | ShaoY_2019_ERR3404980_bin.1_k141_4399_175 | 204741 | 205964 | + | Zn_Ribbon_1 | CD1107-like |
| TC | ShaoY_2019_ERR3404980_bin.1_k141_4399 | ShaoY_2019_ERR3404980_bin.1_k141_4399_176 | 206244 | 207707 | - | 2.A.3.2.3 |
Gene ID: ShaoY_2019_ERR3404980_bin.1_k141_4399_172
Type: CAZyme
Location: 199019 - 200395 (-)
Type: CAZyme
Location: 199019 - 200395 (-)
Gene ID: ShaoY_2019_ERR3404980_bin.1_k141_4399_173
Type: TC
Location: 200549 - 201745 (-)
Type: TC
Location: 200549 - 201745 (-)
Gene ID: ShaoY_2019_ERR3404980_bin.1_k141_4399_174
Type: TC
Location: 201866 - 204226 (-)
Type: TC
Location: 201866 - 204226 (-)
Gene ID: ShaoY_2019_ERR3404980_bin.1_k141_4399_175
Type: pfam
Location: 204741 - 205964 (+)
Type: pfam
Location: 204741 - 205964 (+)
Gene ID: ShaoY_2019_ERR3404980_bin.1_k141_4399_176
Type: TC
Location: 206244 - 207707 (-)
Type: TC
Location: 206244 - 207707 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Species
Collinsella sp900541745
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| ShaoY_2019_ERR3404980_bin.1_k141_4399_175 | vegetarian > vegan | 15.32758 | 0.00364 |
| ShaoY_2019_ERR3404980_bin.1_k141_4399_176 | vegan > omnivore | 1.30675 | 0.00861 |