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Cluster: ShaoY_2019_ERR3404980_bin.1_CGC16

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme ShaoY_2019_ERR3404980_bin.1_k141_4399 ShaoY_2019_ERR3404980_bin.1_k141_4399_33 47676 49058 - GH4
TC ShaoY_2019_ERR3404980_bin.1_k141_4399 ShaoY_2019_ERR3404980_bin.1_k141_4399_34 49062 50678 - 4.A.1.1.3
pfam ShaoY_2019_ERR3404980_bin.1_k141_4399 ShaoY_2019_ERR3404980_bin.1_k141_4399_35 50778 51644 - PRD | PRD | CAT_RBD
TC ShaoY_2019_ERR3404980_bin.1_k141_4399 ShaoY_2019_ERR3404980_bin.1_k141_4399_36 51651 52163 - 4.A.1.2.5
STP ShaoY_2019_ERR3404980_bin.1_k141_4399 ShaoY_2019_ERR3404980_bin.1_k141_4399_37 52507 53268 - Fer4 | Fer4
TC ShaoY_2019_ERR3404980_bin.1_k141_4399 ShaoY_2019_ERR3404980_bin.1_k141_4399_38 53925 56168 - 1.I.1.1.3
TC ShaoY_2019_ERR3404980_bin.1_k141_4399 ShaoY_2019_ERR3404980_bin.1_k141_4399_39 56728 59073 + 3.A.3.5.15
Gene ID: ShaoY_2019_ERR3404980_bin.1_k141_4399_33
Type: CAZyme
Location: 47676 - 49058 (-)
Gene ID: ShaoY_2019_ERR3404980_bin.1_k141_4399_34
Type: TC
Location: 49062 - 50678 (-)
Gene ID: ShaoY_2019_ERR3404980_bin.1_k141_4399_35
Type: pfam
Location: 50778 - 51644 (-)
Gene ID: ShaoY_2019_ERR3404980_bin.1_k141_4399_36
Type: TC
Location: 51651 - 52163 (-)
Gene ID: ShaoY_2019_ERR3404980_bin.1_k141_4399_37
Type: STP
Location: 52507 - 53268 (-)
Gene ID: ShaoY_2019_ERR3404980_bin.1_k141_4399_38
Type: TC
Location: 53925 - 56168 (-)
Gene ID: ShaoY_2019_ERR3404980_bin.1_k141_4399_39
Type: TC
Location: 56728 - 59073 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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