Cluster: ShaoY_2019_ERR3404980_bin.1_CGC12
🧬 Cluster Details
- Gene Count: 8
- CAZyme Count: 2
- Substrate:
- Genome ID: ShaoY_2019_ERR3404980_bin.1
- Continent: Europe
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | ShaoY_2019_ERR3404980_bin.1_k141_4183 | ShaoY_2019_ERR3404980_bin.1_k141_4183_13 | 15351 | 17801 | - | 4.A.1.1.8 |
| TF | ShaoY_2019_ERR3404980_bin.1_k141_4183 | ShaoY_2019_ERR3404980_bin.1_k141_4183_14 | 18031 | 18750 | + | GntR |
| TC | ShaoY_2019_ERR3404980_bin.1_k141_4183 | ShaoY_2019_ERR3404980_bin.1_k141_4183_15 | 19057 | 20373 | + | 3.A.1.1.45 |
| TC | ShaoY_2019_ERR3404980_bin.1_k141_4183 | ShaoY_2019_ERR3404980_bin.1_k141_4183_16 | 20461 | 21315 | + | 3.A.1.1.45 |
| TC | ShaoY_2019_ERR3404980_bin.1_k141_4183 | ShaoY_2019_ERR3404980_bin.1_k141_4183_17 | 21315 | 22154 | + | 3.A.1.1.45 |
| TC | ShaoY_2019_ERR3404980_bin.1_k141_4183 | ShaoY_2019_ERR3404980_bin.1_k141_4183_18 | 22223 | 23422 | + | 3.A.1.1.22 |
| CAZyme | ShaoY_2019_ERR3404980_bin.1_k141_4183 | ShaoY_2019_ERR3404980_bin.1_k141_4183_19 | 23957 | 26224 | - | GT35 |
| CAZyme | ShaoY_2019_ERR3404980_bin.1_k141_4183 | ShaoY_2019_ERR3404980_bin.1_k141_4183_20 | 26353 | 27858 | - | GH77 |
Gene ID: ShaoY_2019_ERR3404980_bin.1_k141_4183_13
Type: TC
Location: 15351 - 17801 (-)
Type: TC
Location: 15351 - 17801 (-)
Gene ID: ShaoY_2019_ERR3404980_bin.1_k141_4183_14
Type: TF
Location: 18031 - 18750 (+)
Type: TF
Location: 18031 - 18750 (+)
Gene ID: ShaoY_2019_ERR3404980_bin.1_k141_4183_15
Type: TC
Location: 19057 - 20373 (+)
Type: TC
Location: 19057 - 20373 (+)
Gene ID: ShaoY_2019_ERR3404980_bin.1_k141_4183_16
Type: TC
Location: 20461 - 21315 (+)
Type: TC
Location: 20461 - 21315 (+)
Gene ID: ShaoY_2019_ERR3404980_bin.1_k141_4183_17
Type: TC
Location: 21315 - 22154 (+)
Type: TC
Location: 21315 - 22154 (+)
Gene ID: ShaoY_2019_ERR3404980_bin.1_k141_4183_18
Type: TC
Location: 22223 - 23422 (+)
Type: TC
Location: 22223 - 23422 (+)
Gene ID: ShaoY_2019_ERR3404980_bin.1_k141_4183_19
Type: CAZyme
Location: 23957 - 26224 (-)
Type: CAZyme
Location: 23957 - 26224 (-)
Gene ID: ShaoY_2019_ERR3404980_bin.1_k141_4183_20
Type: CAZyme
Location: 26353 - 27858 (-)
Type: CAZyme
Location: 26353 - 27858 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Species
Collinsella sp900541745
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.