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Cluster: ShaoY_2019_ERR3404980_bin.1_CGC10

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme ShaoY_2019_ERR3404980_bin.1_k141_2671 ShaoY_2019_ERR3404980_bin.1_k141_2671_39 48320 49489 - CE9
STP ShaoY_2019_ERR3404980_bin.1_k141_2671 ShaoY_2019_ERR3404980_bin.1_k141_2671_40 49605 50771 - SIS | SIS
TF ShaoY_2019_ERR3404980_bin.1_k141_2671 ShaoY_2019_ERR3404980_bin.1_k141_2671_41 50883 51617 - GntR
TC ShaoY_2019_ERR3404980_bin.1_k141_2671 ShaoY_2019_ERR3404980_bin.1_k141_2671_42 51705 52133 - 4.A.6.1.8
NULL(UNKNOWN) ShaoY_2019_ERR3404980_bin.1_k141_2671 ShaoY_2019_ERR3404980_bin.1_k141_2671_43 52215 52838 - NULL(UNKNOWN)
[View Structural Homologs]
TC ShaoY_2019_ERR3404980_bin.1_k141_2671 ShaoY_2019_ERR3404980_bin.1_k141_2671_44 53027 53866 - 4.A.6.1.18
TC ShaoY_2019_ERR3404980_bin.1_k141_2671 ShaoY_2019_ERR3404980_bin.1_k141_2671_45 53856 54743 - 4.A.6.1.18
TC ShaoY_2019_ERR3404980_bin.1_k141_2671 ShaoY_2019_ERR3404980_bin.1_k141_2671_46 54837 55301 - 4.A.6.1.18
CAZyme ShaoY_2019_ERR3404980_bin.1_k141_2671 ShaoY_2019_ERR3404980_bin.1_k141_2671_47 55304 57100 - GH35
pfam ShaoY_2019_ERR3404980_bin.1_k141_2671 ShaoY_2019_ERR3404980_bin.1_k141_2671_48 57586 58059 - DUF386
CAZyme ShaoY_2019_ERR3404980_bin.1_k141_2671 ShaoY_2019_ERR3404980_bin.1_k141_2671_49 58092 59261 - CE9
TF ShaoY_2019_ERR3404980_bin.1_k141_2671 ShaoY_2019_ERR3404980_bin.1_k141_2671_50 59405 60136 - GntR
TC ShaoY_2019_ERR3404980_bin.1_k141_2671 ShaoY_2019_ERR3404980_bin.1_k141_2671_51 60369 61856 - 4.A.1.1.7
Gene ID: ShaoY_2019_ERR3404980_bin.1_k141_2671_39
Type: CAZyme
Location: 48320 - 49489 (-)
Gene ID: ShaoY_2019_ERR3404980_bin.1_k141_2671_40
Type: STP
Location: 49605 - 50771 (-)
Gene ID: ShaoY_2019_ERR3404980_bin.1_k141_2671_41
Type: TF
Location: 50883 - 51617 (-)
Gene ID: ShaoY_2019_ERR3404980_bin.1_k141_2671_42
Type: TC
Location: 51705 - 52133 (-)
Gene ID: ShaoY_2019_ERR3404980_bin.1_k141_2671_43
Type:
Location: 52215 - 52838 (-)
Gene ID: ShaoY_2019_ERR3404980_bin.1_k141_2671_44
Type: TC
Location: 53027 - 53866 (-)
Gene ID: ShaoY_2019_ERR3404980_bin.1_k141_2671_45
Type: TC
Location: 53856 - 54743 (-)
Gene ID: ShaoY_2019_ERR3404980_bin.1_k141_2671_46
Type: TC
Location: 54837 - 55301 (-)
Gene ID: ShaoY_2019_ERR3404980_bin.1_k141_2671_47
Type: CAZyme
Location: 55304 - 57100 (-)
Gene ID: ShaoY_2019_ERR3404980_bin.1_k141_2671_48
Type: pfam
Location: 57586 - 58059 (-)
Gene ID: ShaoY_2019_ERR3404980_bin.1_k141_2671_49
Type: CAZyme
Location: 58092 - 59261 (-)
Gene ID: ShaoY_2019_ERR3404980_bin.1_k141_2671_50
Type: TF
Location: 59405 - 60136 (-)
Gene ID: ShaoY_2019_ERR3404980_bin.1_k141_2671_51
Type: TC
Location: 60369 - 61856 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
ShaoY_2019_ERR3404980_bin.1_k141_2671_44 vegetarian > vegan 2.54600 0.00364
ShaoY_2019_ERR3404980_bin.1_k141_2671_45 vegetarian > vegan 2.48381 0.00364
ShaoY_2019_ERR3404980_bin.1_k141_2671_46 vegetarian > vegan 3.32496 0.00364
ShaoY_2019_ERR3404980_bin.1_k141_2671_47 vegetarian > vegan 2.74882 0.00364
ShaoY_2019_ERR3404980_bin.1_k141_2671_50 vegetarian > vegan 3.39383 0.00364

🧭 Explore Read Mapping of CGC

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