Cluster: ShaoY_2019_ERR3404980_bin.1_CGC1
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 1
- Substrate:
- Genome ID: ShaoY_2019_ERR3404980_bin.1
- Continent: Europe
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | ShaoY_2019_ERR3404980_bin.1_k141_1041 | ShaoY_2019_ERR3404980_bin.1_k141_1041_1 | 1 | 636 | - | 9.B.18.2.1 |
| CAZyme | ShaoY_2019_ERR3404980_bin.1_k141_1041 | ShaoY_2019_ERR3404980_bin.1_k141_1041_2 | 648 | 1874 | - | GT4 |
| pfam | ShaoY_2019_ERR3404980_bin.1_k141_1041 | ShaoY_2019_ERR3404980_bin.1_k141_1041_3 | 1874 | 2980 | - | Glycos_transf_1 | Glyco_transf_4 | Glyco_trans_1_4 |
| TC | ShaoY_2019_ERR3404980_bin.1_k141_1041 | ShaoY_2019_ERR3404980_bin.1_k141_1041_4 | 2977 | 3750 | - | 9.B.18.1.3 |
Gene ID: ShaoY_2019_ERR3404980_bin.1_k141_1041_1
Type: TC
Location: 1 - 636 (-)
Type: TC
Location: 1 - 636 (-)
Gene ID: ShaoY_2019_ERR3404980_bin.1_k141_1041_2
Type: CAZyme
Location: 648 - 1874 (-)
Type: CAZyme
Location: 648 - 1874 (-)
Gene ID: ShaoY_2019_ERR3404980_bin.1_k141_1041_3
Type: pfam
Location: 1874 - 2980 (-)
Type: pfam
Location: 1874 - 2980 (-)
Gene ID: ShaoY_2019_ERR3404980_bin.1_k141_1041_4
Type: TC
Location: 2977 - 3750 (-)
Type: TC
Location: 2977 - 3750 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Species
Collinsella sp900541745
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.