Cluster: ShaoY_2019_ERR3404958_bin.2_CGC5
🧬 Cluster Details
- Gene Count: 20
- CAZyme Count: 10
- Substrate:
- Genome ID: ShaoY_2019_ERR3404958_bin.2
- CGC Family ID: CGCFAM_00003
- Continent: Europe
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | ShaoY_2019_ERR3404958_bin.2_k141_1116 | ShaoY_2019_ERR3404958_bin.2_k141_1116_21 | 16973 | 18181 | - | 3.A.1.103.5 |
| pfam | ShaoY_2019_ERR3404958_bin.2_k141_1116 | ShaoY_2019_ERR3404958_bin.2_k141_1116_22 | 18181 | 18990 | - | ABC2_membrane |
| CAZyme | ShaoY_2019_ERR3404958_bin.2_k141_1116 | ShaoY_2019_ERR3404958_bin.2_k141_1116_23 | 18990 | 19931 | - | GT2 |
| CAZyme | ShaoY_2019_ERR3404958_bin.2_k141_1116 | ShaoY_2019_ERR3404958_bin.2_k141_1116_24 | 19928 | 21076 | - | GT4 |
| CAZyme | ShaoY_2019_ERR3404958_bin.2_k141_1116 | ShaoY_2019_ERR3404958_bin.2_k141_1116_25 | 21220 | 22467 | - | GT4 |
| pfam | ShaoY_2019_ERR3404958_bin.2_k141_1116 | ShaoY_2019_ERR3404958_bin.2_k141_1116_26 | 22477 | 23703 | - | DUF2142 |
| CAZyme | ShaoY_2019_ERR3404958_bin.2_k141_1116 | ShaoY_2019_ERR3404958_bin.2_k141_1116_27 | 23762 | 26713 | - | GT2 |
| NULL(UNKNOWN) | ShaoY_2019_ERR3404958_bin.2_k141_1116 | ShaoY_2019_ERR3404958_bin.2_k141_1116_28 | 26910 | 28127 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | ShaoY_2019_ERR3404958_bin.2_k141_1116 | ShaoY_2019_ERR3404958_bin.2_k141_1116_29 | 28151 | 28927 | - | GT2 |
| pfam | ShaoY_2019_ERR3404958_bin.2_k141_1116 | ShaoY_2019_ERR3404958_bin.2_k141_1116_30 | 28917 | 29273 | - | DUF2304 |
| CAZyme | ShaoY_2019_ERR3404958_bin.2_k141_1116 | ShaoY_2019_ERR3404958_bin.2_k141_1116_31 | 29273 | 29977 | - | GT2 |
| CAZyme | ShaoY_2019_ERR3404958_bin.2_k141_1116 | ShaoY_2019_ERR3404958_bin.2_k141_1116_32 | 29990 | 30958 | - | GT2 |
| CAZyme | ShaoY_2019_ERR3404958_bin.2_k141_1116 | ShaoY_2019_ERR3404958_bin.2_k141_1116_33 | 30976 | 31920 | - | GT2 |
| pfam | ShaoY_2019_ERR3404958_bin.2_k141_1116 | ShaoY_2019_ERR3404958_bin.2_k141_1116_34 | 31926 | 33212 | - | Polysacc_synt |
| pfam | ShaoY_2019_ERR3404958_bin.2_k141_1116 | ShaoY_2019_ERR3404958_bin.2_k141_1116_35 | 33298 | 34149 | - | 3Beta_HSD | Epimerase | Polysacc_synt_2 | RmlD_sub_bind | NAD_binding_4 | GDP_Man_Dehyd |
| TC | ShaoY_2019_ERR3404958_bin.2_k141_1116 | ShaoY_2019_ERR3404958_bin.2_k141_1116_36 | 34226 | 35701 | - | 3.A.7.19.1 |
| CAZyme | ShaoY_2019_ERR3404958_bin.2_k141_1116 | ShaoY_2019_ERR3404958_bin.2_k141_1116_37 | 35705 | 36628 | - | GT2 |
| pfam | ShaoY_2019_ERR3404958_bin.2_k141_1116 | ShaoY_2019_ERR3404958_bin.2_k141_1116_38 | 36755 | 37735 | + | GFO_IDH_MocA |
| TC | ShaoY_2019_ERR3404958_bin.2_k141_1116 | ShaoY_2019_ERR3404958_bin.2_k141_1116_39 | 37732 | 38817 | + | 1.I.1.1.3 |
| CAZyme | ShaoY_2019_ERR3404958_bin.2_k141_1116 | ShaoY_2019_ERR3404958_bin.2_k141_1116_40 | 38860 | 40242 | - | CE4 |
Gene ID: ShaoY_2019_ERR3404958_bin.2_k141_1116_21
Type: TC
Location: 16973 - 18181 (-)
Type: TC
Location: 16973 - 18181 (-)
Gene ID: ShaoY_2019_ERR3404958_bin.2_k141_1116_22
Type: pfam
Location: 18181 - 18990 (-)
Type: pfam
Location: 18181 - 18990 (-)
Gene ID: ShaoY_2019_ERR3404958_bin.2_k141_1116_23
Type: CAZyme
Location: 18990 - 19931 (-)
Type: CAZyme
Location: 18990 - 19931 (-)
Gene ID: ShaoY_2019_ERR3404958_bin.2_k141_1116_24
Type: CAZyme
Location: 19928 - 21076 (-)
Type: CAZyme
Location: 19928 - 21076 (-)
Gene ID: ShaoY_2019_ERR3404958_bin.2_k141_1116_25
Type: CAZyme
Location: 21220 - 22467 (-)
Type: CAZyme
Location: 21220 - 22467 (-)
Gene ID: ShaoY_2019_ERR3404958_bin.2_k141_1116_26
Type: pfam
Location: 22477 - 23703 (-)
Type: pfam
Location: 22477 - 23703 (-)
Gene ID: ShaoY_2019_ERR3404958_bin.2_k141_1116_27
Type: CAZyme
Location: 23762 - 26713 (-)
Type: CAZyme
Location: 23762 - 26713 (-)
Gene ID: ShaoY_2019_ERR3404958_bin.2_k141_1116_28
Type:
Location: 26910 - 28127 (-)
Type:
Location: 26910 - 28127 (-)
Gene ID: ShaoY_2019_ERR3404958_bin.2_k141_1116_29
Type: CAZyme
Location: 28151 - 28927 (-)
Type: CAZyme
Location: 28151 - 28927 (-)
Gene ID: ShaoY_2019_ERR3404958_bin.2_k141_1116_30
Type: pfam
Location: 28917 - 29273 (-)
Type: pfam
Location: 28917 - 29273 (-)
Gene ID: ShaoY_2019_ERR3404958_bin.2_k141_1116_31
Type: CAZyme
Location: 29273 - 29977 (-)
Type: CAZyme
Location: 29273 - 29977 (-)
Gene ID: ShaoY_2019_ERR3404958_bin.2_k141_1116_32
Type: CAZyme
Location: 29990 - 30958 (-)
Type: CAZyme
Location: 29990 - 30958 (-)
Gene ID: ShaoY_2019_ERR3404958_bin.2_k141_1116_33
Type: CAZyme
Location: 30976 - 31920 (-)
Type: CAZyme
Location: 30976 - 31920 (-)
Gene ID: ShaoY_2019_ERR3404958_bin.2_k141_1116_34
Type: pfam
Location: 31926 - 33212 (-)
Type: pfam
Location: 31926 - 33212 (-)
Gene ID: ShaoY_2019_ERR3404958_bin.2_k141_1116_35
Type: pfam
Location: 33298 - 34149 (-)
Type: pfam
Location: 33298 - 34149 (-)
Gene ID: ShaoY_2019_ERR3404958_bin.2_k141_1116_36
Type: TC
Location: 34226 - 35701 (-)
Type: TC
Location: 34226 - 35701 (-)
Gene ID: ShaoY_2019_ERR3404958_bin.2_k141_1116_37
Type: CAZyme
Location: 35705 - 36628 (-)
Type: CAZyme
Location: 35705 - 36628 (-)
Gene ID: ShaoY_2019_ERR3404958_bin.2_k141_1116_38
Type: pfam
Location: 36755 - 37735 (+)
Type: pfam
Location: 36755 - 37735 (+)
Gene ID: ShaoY_2019_ERR3404958_bin.2_k141_1116_39
Type: TC
Location: 37732 - 38817 (+)
Type: TC
Location: 37732 - 38817 (+)
Gene ID: ShaoY_2019_ERR3404958_bin.2_k141_1116_40
Type: CAZyme
Location: 38860 - 40242 (-)
Type: CAZyme
Location: 38860 - 40242 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota
Class
Bacilli
Order
Lactobacillales
Family
Streptococcaceae
Genus
Streptococcus
Species
Streptococcus sp030825825
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| ShaoY_2019_ERR3404958_bin.2_k141_1116_29 | vegetarian > omnivore | 1.20363 | 0.00266 |
| ShaoY_2019_ERR3404958_bin.2_k141_1116_35 | vegan > omnivore | 1.01826 | 0.00732 |