Cluster: ShaoY_2019_ERR3404958_bin.2_CGC4
🧬 Cluster Details
- Gene Count: 11
- CAZyme Count: 1
- Substrate:
- Genome ID: ShaoY_2019_ERR3404958_bin.2
- Continent: Europe
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | ShaoY_2019_ERR3404958_bin.2_k141_919 | ShaoY_2019_ERR3404958_bin.2_k141_919_59 | 59610 | 61571 | + | 3.A.2.2.2 |
| TC | ShaoY_2019_ERR3404958_bin.2_k141_919 | ShaoY_2019_ERR3404958_bin.2_k141_919_60 | 61602 | 62081 | + | 3.A.2.2.2 |
| NULL(UNKNOWN) | ShaoY_2019_ERR3404958_bin.2_k141_919 | ShaoY_2019_ERR3404958_bin.2_k141_919_61 | 62152 | 62742 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | ShaoY_2019_ERR3404958_bin.2_k141_919 | ShaoY_2019_ERR3404958_bin.2_k141_919_62 | 62752 | 63771 | + | 3.A.2.2.2 |
| TC | ShaoY_2019_ERR3404958_bin.2_k141_919 | ShaoY_2019_ERR3404958_bin.2_k141_919_63 | 63752 | 64072 | + | 3.A.2.2.2 |
| pfam | ShaoY_2019_ERR3404958_bin.2_k141_919 | ShaoY_2019_ERR3404958_bin.2_k141_919_64 | 64069 | 64773 | + | Acetyltransf_1 | Acetyltransf_3 |
| TC | ShaoY_2019_ERR3404958_bin.2_k141_919 | ShaoY_2019_ERR3404958_bin.2_k141_919_65 | 64807 | 66597 | + | 3.A.2.2.2 |
| TC | ShaoY_2019_ERR3404958_bin.2_k141_919 | ShaoY_2019_ERR3404958_bin.2_k141_919_66 | 66584 | 67969 | + | 3.A.2.2.2 |
| TC | ShaoY_2019_ERR3404958_bin.2_k141_919 | ShaoY_2019_ERR3404958_bin.2_k141_919_67 | 67973 | 68596 | + | 3.A.2.2.2 |
| CAZyme | ShaoY_2019_ERR3404958_bin.2_k141_919 | ShaoY_2019_ERR3404958_bin.2_k141_919_68 | 69070 | 70203 | + | CBM50 |
| TC | ShaoY_2019_ERR3404958_bin.2_k141_919 | ShaoY_2019_ERR3404958_bin.2_k141_919_69 | 70290 | 71459 | - | 2.A.1.17.3 |
Gene ID: ShaoY_2019_ERR3404958_bin.2_k141_919_59
Type: TC
Location: 59610 - 61571 (+)
Type: TC
Location: 59610 - 61571 (+)
Gene ID: ShaoY_2019_ERR3404958_bin.2_k141_919_60
Type: TC
Location: 61602 - 62081 (+)
Type: TC
Location: 61602 - 62081 (+)
Gene ID: ShaoY_2019_ERR3404958_bin.2_k141_919_61
Type:
Location: 62152 - 62742 (+)
Type:
Location: 62152 - 62742 (+)
Gene ID: ShaoY_2019_ERR3404958_bin.2_k141_919_62
Type: TC
Location: 62752 - 63771 (+)
Type: TC
Location: 62752 - 63771 (+)
Gene ID: ShaoY_2019_ERR3404958_bin.2_k141_919_63
Type: TC
Location: 63752 - 64072 (+)
Type: TC
Location: 63752 - 64072 (+)
Gene ID: ShaoY_2019_ERR3404958_bin.2_k141_919_64
Type: pfam
Location: 64069 - 64773 (+)
Type: pfam
Location: 64069 - 64773 (+)
Gene ID: ShaoY_2019_ERR3404958_bin.2_k141_919_65
Type: TC
Location: 64807 - 66597 (+)
Type: TC
Location: 64807 - 66597 (+)
Gene ID: ShaoY_2019_ERR3404958_bin.2_k141_919_66
Type: TC
Location: 66584 - 67969 (+)
Type: TC
Location: 66584 - 67969 (+)
Gene ID: ShaoY_2019_ERR3404958_bin.2_k141_919_67
Type: TC
Location: 67973 - 68596 (+)
Type: TC
Location: 67973 - 68596 (+)
Gene ID: ShaoY_2019_ERR3404958_bin.2_k141_919_68
Type: CAZyme
Location: 69070 - 70203 (+)
Type: CAZyme
Location: 69070 - 70203 (+)
Gene ID: ShaoY_2019_ERR3404958_bin.2_k141_919_69
Type: TC
Location: 70290 - 71459 (-)
Type: TC
Location: 70290 - 71459 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota
Class
Bacilli
Order
Lactobacillales
Family
Streptococcaceae
Genus
Streptococcus
Species
Streptococcus sp030825825
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
Loading chart...
Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| ShaoY_2019_ERR3404958_bin.2_k141_919_60 | vegan > omnivore | 1.51133 | 0.00732 |
| ShaoY_2019_ERR3404958_bin.2_k141_919_64 | vegan > omnivore | 3.38116 | 0.00732 |
| ShaoY_2019_ERR3404958_bin.2_k141_919_64 | vegetarian > omnivore | 3.64767 | 0.00266 |
| ShaoY_2019_ERR3404958_bin.2_k141_919_65 | vegetarian > omnivore | 1.30526 | 0.00266 |
| ShaoY_2019_ERR3404958_bin.2_k141_919_67 | vegan > omnivore | 2.87391 | 0.00732 |
| ShaoY_2019_ERR3404958_bin.2_k141_919_67 | vegetarian > omnivore | 3.04076 | 0.00266 |