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Cluster: ShaoY_2019_ERR3404958_bin.2_CGC30

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC ShaoY_2019_ERR3404958_bin.2_k141_5246 ShaoY_2019_ERR3404958_bin.2_k141_5246_15 13884 15350 - 3.A.9.1.1
pfam ShaoY_2019_ERR3404958_bin.2_k141_5246 ShaoY_2019_ERR3404958_bin.2_k141_5246_16 15350 15652 - GatC
CAZyme ShaoY_2019_ERR3404958_bin.2_k141_5246 ShaoY_2019_ERR3404958_bin.2_k141_5246_17 15772 17265 - GT4
NULL(UNKNOWN) ShaoY_2019_ERR3404958_bin.2_k141_5246 ShaoY_2019_ERR3404958_bin.2_k141_5246_18 17262 18545 - NULL(UNKNOWN)
[View Structural Homologs]
CAZyme ShaoY_2019_ERR3404958_bin.2_k141_5246 ShaoY_2019_ERR3404958_bin.2_k141_5246_19 18572 19459 - GT2
CAZyme ShaoY_2019_ERR3404958_bin.2_k141_5246 ShaoY_2019_ERR3404958_bin.2_k141_5246_20 19446 20669 - GT8
Gene ID: ShaoY_2019_ERR3404958_bin.2_k141_5246_15
Type: TC
Location: 13884 - 15350 (-)
Gene ID: ShaoY_2019_ERR3404958_bin.2_k141_5246_16
Type: pfam
Location: 15350 - 15652 (-)
Gene ID: ShaoY_2019_ERR3404958_bin.2_k141_5246_17
Type: CAZyme
Location: 15772 - 17265 (-)
Gene ID: ShaoY_2019_ERR3404958_bin.2_k141_5246_18
Type:
Location: 17262 - 18545 (-)
Gene ID: ShaoY_2019_ERR3404958_bin.2_k141_5246_19
Type: CAZyme
Location: 18572 - 19459 (-)
Gene ID: ShaoY_2019_ERR3404958_bin.2_k141_5246_20
Type: CAZyme
Location: 19446 - 20669 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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