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Cluster: ShaoY_2019_ERR3404958_bin.2_CGC19

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC ShaoY_2019_ERR3404958_bin.2_k141_3870 ShaoY_2019_ERR3404958_bin.2_k141_3870_30 28090 28785 + 8.A.3.2.3
TC ShaoY_2019_ERR3404958_bin.2_k141_3870 ShaoY_2019_ERR3404958_bin.2_k141_3870_31 28798 29490 + 8.A.3.2.2
TC ShaoY_2019_ERR3404958_bin.2_k141_3870 ShaoY_2019_ERR3404958_bin.2_k141_3870_32 29510 30886 + 9.B.18.1.2
CAZyme ShaoY_2019_ERR3404958_bin.2_k141_3870 ShaoY_2019_ERR3404958_bin.2_k141_3870_33 30925 32097 + GT4
CAZyme ShaoY_2019_ERR3404958_bin.2_k141_3870 ShaoY_2019_ERR3404958_bin.2_k141_3870_34 32100 33248 + GT4
pfam ShaoY_2019_ERR3404958_bin.2_k141_3870 ShaoY_2019_ERR3404958_bin.2_k141_3870_35 33250 33891 + DUF1919
pfam ShaoY_2019_ERR3404958_bin.2_k141_3870 ShaoY_2019_ERR3404958_bin.2_k141_3870_36 33888 34859 + DUF6625
CAZyme ShaoY_2019_ERR3404958_bin.2_k141_3870 ShaoY_2019_ERR3404958_bin.2_k141_3870_37 34852 35922 + GT2
NULL(UNKNOWN) ShaoY_2019_ERR3404958_bin.2_k141_3870 ShaoY_2019_ERR3404958_bin.2_k141_3870_38 35956 37104 + NULL(UNKNOWN)
[View Structural Homologs]
TC ShaoY_2019_ERR3404958_bin.2_k141_3870 ShaoY_2019_ERR3404958_bin.2_k141_3870_39 37101 38522 + 2.A.66.2.16
STP ShaoY_2019_ERR3404958_bin.2_k141_3870 ShaoY_2019_ERR3404958_bin.2_k141_3870_40 38533 39633 + Pyr_redox
pfam ShaoY_2019_ERR3404958_bin.2_k141_3870 ShaoY_2019_ERR3404958_bin.2_k141_3870_41 39630 40622 + Stealth_CR2 | Stealth_CR1
CAZyme ShaoY_2019_ERR3404958_bin.2_k141_3870 ShaoY_2019_ERR3404958_bin.2_k141_3870_42 40633 41685 + GT113
pfam ShaoY_2019_ERR3404958_bin.2_k141_3870 ShaoY_2019_ERR3404958_bin.2_k141_3870_43 41831 44593 + CHAP | GBS_Bsp-like | GBS_Bsp-like | GBS_Bsp-like | GBS_Bsp-like | GBS_Bsp-like | GBS_Bsp-like
pfam ShaoY_2019_ERR3404958_bin.2_k141_3870 ShaoY_2019_ERR3404958_bin.2_k141_3870_44 44623 45486 - PseudoU_synth_2
CAZyme ShaoY_2019_ERR3404958_bin.2_k141_3870 ShaoY_2019_ERR3404958_bin.2_k141_3870_45 45590 47824 + GT51
Gene ID: ShaoY_2019_ERR3404958_bin.2_k141_3870_30
Type: TC
Location: 28090 - 28785 (+)
Gene ID: ShaoY_2019_ERR3404958_bin.2_k141_3870_31
Type: TC
Location: 28798 - 29490 (+)
Gene ID: ShaoY_2019_ERR3404958_bin.2_k141_3870_32
Type: TC
Location: 29510 - 30886 (+)
Gene ID: ShaoY_2019_ERR3404958_bin.2_k141_3870_33
Type: CAZyme
Location: 30925 - 32097 (+)
Gene ID: ShaoY_2019_ERR3404958_bin.2_k141_3870_34
Type: CAZyme
Location: 32100 - 33248 (+)
Gene ID: ShaoY_2019_ERR3404958_bin.2_k141_3870_35
Type: pfam
Location: 33250 - 33891 (+)
Gene ID: ShaoY_2019_ERR3404958_bin.2_k141_3870_36
Type: pfam
Location: 33888 - 34859 (+)
Gene ID: ShaoY_2019_ERR3404958_bin.2_k141_3870_37
Type: CAZyme
Location: 34852 - 35922 (+)
Gene ID: ShaoY_2019_ERR3404958_bin.2_k141_3870_38
Type:
Location: 35956 - 37104 (+)
Gene ID: ShaoY_2019_ERR3404958_bin.2_k141_3870_39
Type: TC
Location: 37101 - 38522 (+)
Gene ID: ShaoY_2019_ERR3404958_bin.2_k141_3870_40
Type: STP
Location: 38533 - 39633 (+)
Gene ID: ShaoY_2019_ERR3404958_bin.2_k141_3870_41
Type: pfam
Location: 39630 - 40622 (+)
Gene ID: ShaoY_2019_ERR3404958_bin.2_k141_3870_42
Type: CAZyme
Location: 40633 - 41685 (+)
Gene ID: ShaoY_2019_ERR3404958_bin.2_k141_3870_43
Type: pfam
Location: 41831 - 44593 (+)
Gene ID: ShaoY_2019_ERR3404958_bin.2_k141_3870_44
Type: pfam
Location: 44623 - 45486 (-)
Gene ID: ShaoY_2019_ERR3404958_bin.2_k141_3870_45
Type: CAZyme
Location: 45590 - 47824 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
ShaoY_2019_ERR3404958_bin.2_k141_3870_44 vegetarian > omnivore 1.12780 0.00266

🧭 Explore Read Mapping of CGC

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