Cluster: ShaoY_2019_ERR3404937_bin.4_CGC27
🧬 Cluster Details
- Gene Count: 11
- CAZyme Count: 1
- Substrate:
- Genome ID: ShaoY_2019_ERR3404937_bin.4
- CGC Family ID: CGCFAM_05347
- Continent: Europe
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | ShaoY_2019_ERR3404937_bin.4_k141_4652 | ShaoY_2019_ERR3404937_bin.4_k141_4652_50 | 60589 | 62259 | - | 3.A.1.121.4 |
| NULL(UNKNOWN) | ShaoY_2019_ERR3404937_bin.4_k141_4652 | ShaoY_2019_ERR3404937_bin.4_k141_4652_51 | 62355 | 62999 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | ShaoY_2019_ERR3404937_bin.4_k141_4652 | ShaoY_2019_ERR3404937_bin.4_k141_4652_52 | 63230 | 65521 | + | 4.A.1.2.12 |
| pfam | ShaoY_2019_ERR3404937_bin.4_k141_4652 | ShaoY_2019_ERR3404937_bin.4_k141_4652_53 | 65606 | 66490 | - | SpoU_methylase |
| TC | ShaoY_2019_ERR3404937_bin.4_k141_4652 | ShaoY_2019_ERR3404937_bin.4_k141_4652_54 | 66487 | 68478 | - | 3.A.1.135.6 |
| TC | ShaoY_2019_ERR3404937_bin.4_k141_4652 | ShaoY_2019_ERR3404937_bin.4_k141_4652_55 | 68475 | 70235 | - | 3.A.1.135.7 |
| TC | ShaoY_2019_ERR3404937_bin.4_k141_4652 | ShaoY_2019_ERR3404937_bin.4_k141_4652_56 | 70407 | 71585 | - | 8.A.21.2.2 |
| pfam | ShaoY_2019_ERR3404937_bin.4_k141_4652 | ShaoY_2019_ERR3404937_bin.4_k141_4652_57 | 71651 | 72103 | - | NfeD |
| TC | ShaoY_2019_ERR3404937_bin.4_k141_4652 | ShaoY_2019_ERR3404937_bin.4_k141_4652_58 | 72179 | 72991 | - | 3.A.1.23.8 |
| NULL(UNKNOWN) | ShaoY_2019_ERR3404937_bin.4_k141_4652 | ShaoY_2019_ERR3404937_bin.4_k141_4652_59 | 73128 | 73853 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | ShaoY_2019_ERR3404937_bin.4_k141_4652 | ShaoY_2019_ERR3404937_bin.4_k141_4652_60 | 73931 | 75163 | - | GT5 |
Gene ID: ShaoY_2019_ERR3404937_bin.4_k141_4652_50
Type: TC
Location: 60589 - 62259 (-)
Type: TC
Location: 60589 - 62259 (-)
Gene ID: ShaoY_2019_ERR3404937_bin.4_k141_4652_51
Type:
Location: 62355 - 62999 (-)
Type:
Location: 62355 - 62999 (-)
Gene ID: ShaoY_2019_ERR3404937_bin.4_k141_4652_52
Type: TC
Location: 63230 - 65521 (+)
Type: TC
Location: 63230 - 65521 (+)
Gene ID: ShaoY_2019_ERR3404937_bin.4_k141_4652_53
Type: pfam
Location: 65606 - 66490 (-)
Type: pfam
Location: 65606 - 66490 (-)
Gene ID: ShaoY_2019_ERR3404937_bin.4_k141_4652_54
Type: TC
Location: 66487 - 68478 (-)
Type: TC
Location: 66487 - 68478 (-)
Gene ID: ShaoY_2019_ERR3404937_bin.4_k141_4652_55
Type: TC
Location: 68475 - 70235 (-)
Type: TC
Location: 68475 - 70235 (-)
Gene ID: ShaoY_2019_ERR3404937_bin.4_k141_4652_56
Type: TC
Location: 70407 - 71585 (-)
Type: TC
Location: 70407 - 71585 (-)
Gene ID: ShaoY_2019_ERR3404937_bin.4_k141_4652_57
Type: pfam
Location: 71651 - 72103 (-)
Type: pfam
Location: 71651 - 72103 (-)
Gene ID: ShaoY_2019_ERR3404937_bin.4_k141_4652_58
Type: TC
Location: 72179 - 72991 (-)
Type: TC
Location: 72179 - 72991 (-)
Gene ID: ShaoY_2019_ERR3404937_bin.4_k141_4652_59
Type:
Location: 73128 - 73853 (+)
Type:
Location: 73128 - 73853 (+)
Gene ID: ShaoY_2019_ERR3404937_bin.4_k141_4652_60
Type: CAZyme
Location: 73931 - 75163 (-)
Type: CAZyme
Location: 73931 - 75163 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Actinomycetes
Order
Actinomycetales
Family
Actinomycetaceae
Genus
Actinomyces
Species
Actinomyces haliotis
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
Loading chart...
No differentially abundant genes found in the 2019 study.