Cluster: ShaoY_2019_ERR3404906_bin.6_CGC5
🧬 Cluster Details
- Gene Count: 10
- CAZyme Count: 2
- Substrate:
- Genome ID: ShaoY_2019_ERR3404906_bin.6
- CGC Family ID: CGCFAM_07867
- Continent: Europe
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | ShaoY_2019_ERR3404906_bin.6_k141_2726 | ShaoY_2019_ERR3404906_bin.6_k141_2726_52 | 48209 | 51232 | + | GH2 |
| CAZyme | ShaoY_2019_ERR3404906_bin.6_k141_2726 | ShaoY_2019_ERR3404906_bin.6_k141_2726_53 | 51261 | 52352 | + | GH170 |
| TC | ShaoY_2019_ERR3404906_bin.6_k141_2726 | ShaoY_2019_ERR3404906_bin.6_k141_2726_54 | 52388 | 52708 | + | 4.A.3.2.1 |
| TC | ShaoY_2019_ERR3404906_bin.6_k141_2726 | ShaoY_2019_ERR3404906_bin.6_k141_2726_55 | 52727 | 54055 | + | 4.A.3.2.2 |
| TC | ShaoY_2019_ERR3404906_bin.6_k141_2726 | ShaoY_2019_ERR3404906_bin.6_k141_2726_56 | 54070 | 54408 | + | 4.A.3.2.3 |
| pfam | ShaoY_2019_ERR3404906_bin.6_k141_2726 | ShaoY_2019_ERR3404906_bin.6_k141_2726_57 | 54411 | 54899 | + | GRDB |
| TC | ShaoY_2019_ERR3404906_bin.6_k141_2726 | ShaoY_2019_ERR3404906_bin.6_k141_2726_58 | 55509 | 58112 | + | 3.A.9.1.2 |
| NULL(UNKNOWN) | ShaoY_2019_ERR3404906_bin.6_k141_2726 | ShaoY_2019_ERR3404906_bin.6_k141_2726_59 | 58234 | 58632 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | ShaoY_2019_ERR3404906_bin.6_k141_2726 | ShaoY_2019_ERR3404906_bin.6_k141_2726_60 | 58814 | 59992 | + | 2.A.37.2.3 |
| TC | ShaoY_2019_ERR3404906_bin.6_k141_2726 | ShaoY_2019_ERR3404906_bin.6_k141_2726_61 | 60330 | 61529 | + | 2.A.37.2.3 |
Gene ID: ShaoY_2019_ERR3404906_bin.6_k141_2726_52
Type: CAZyme
Location: 48209 - 51232 (+)
Type: CAZyme
Location: 48209 - 51232 (+)
Gene ID: ShaoY_2019_ERR3404906_bin.6_k141_2726_53
Type: CAZyme
Location: 51261 - 52352 (+)
Type: CAZyme
Location: 51261 - 52352 (+)
Gene ID: ShaoY_2019_ERR3404906_bin.6_k141_2726_54
Type: TC
Location: 52388 - 52708 (+)
Type: TC
Location: 52388 - 52708 (+)
Gene ID: ShaoY_2019_ERR3404906_bin.6_k141_2726_55
Type: TC
Location: 52727 - 54055 (+)
Type: TC
Location: 52727 - 54055 (+)
Gene ID: ShaoY_2019_ERR3404906_bin.6_k141_2726_56
Type: TC
Location: 54070 - 54408 (+)
Type: TC
Location: 54070 - 54408 (+)
Gene ID: ShaoY_2019_ERR3404906_bin.6_k141_2726_57
Type: pfam
Location: 54411 - 54899 (+)
Type: pfam
Location: 54411 - 54899 (+)
Gene ID: ShaoY_2019_ERR3404906_bin.6_k141_2726_58
Type: TC
Location: 55509 - 58112 (+)
Type: TC
Location: 55509 - 58112 (+)
Gene ID: ShaoY_2019_ERR3404906_bin.6_k141_2726_59
Type:
Location: 58234 - 58632 (+)
Type:
Location: 58234 - 58632 (+)
Gene ID: ShaoY_2019_ERR3404906_bin.6_k141_2726_60
Type: TC
Location: 58814 - 59992 (+)
Type: TC
Location: 58814 - 59992 (+)
Gene ID: ShaoY_2019_ERR3404906_bin.6_k141_2726_61
Type: TC
Location: 60330 - 61529 (+)
Type: TC
Location: 60330 - 61529 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Clostridiales
Family
Clostridiaceae
Genus
Clostridium
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.