Cluster: ShaoY_2019_ERR3404906_bin.6_CGC41
🧬 Cluster Details
- Gene Count: 8
- CAZyme Count: 2
- Substrate:
- Genome ID: ShaoY_2019_ERR3404906_bin.6
- Continent: Europe
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | ShaoY_2019_ERR3404906_bin.6_k141_9599 | ShaoY_2019_ERR3404906_bin.6_k141_9599_146 | 159609 | 161657 | + | 3.A.25.2.1 |
| pfam | ShaoY_2019_ERR3404906_bin.6_k141_9599 | ShaoY_2019_ERR3404906_bin.6_k141_9599_147 | 161681 | 163792 | + | UvrD-helicase | AAA_19 | UvrD_C |
| NULL(UNKNOWN) | ShaoY_2019_ERR3404906_bin.6_k141_9599 | ShaoY_2019_ERR3404906_bin.6_k141_9599_148 | 163838 | 164932 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | ShaoY_2019_ERR3404906_bin.6_k141_9599 | ShaoY_2019_ERR3404906_bin.6_k141_9599_149 | 165201 | 166043 | + | 3.A.1.3.27 |
| TC | ShaoY_2019_ERR3404906_bin.6_k141_9599 | ShaoY_2019_ERR3404906_bin.6_k141_9599_150 | 166134 | 166820 | + | 3.A.1.3.20 |
| TC | ShaoY_2019_ERR3404906_bin.6_k141_9599 | ShaoY_2019_ERR3404906_bin.6_k141_9599_151 | 166807 | 167529 | + | 3.A.1.3.15 |
| CAZyme | ShaoY_2019_ERR3404906_bin.6_k141_9599 | ShaoY_2019_ERR3404906_bin.6_k141_9599_152 | 167550 | 169037 | + | GH77 |
| CAZyme | ShaoY_2019_ERR3404906_bin.6_k141_9599 | ShaoY_2019_ERR3404906_bin.6_k141_9599_153 | 169139 | 171133 | + | GH13_14 |
Gene ID: ShaoY_2019_ERR3404906_bin.6_k141_9599_146
Type: TC
Location: 159609 - 161657 (+)
Type: TC
Location: 159609 - 161657 (+)
Gene ID: ShaoY_2019_ERR3404906_bin.6_k141_9599_147
Type: pfam
Location: 161681 - 163792 (+)
Type: pfam
Location: 161681 - 163792 (+)
Gene ID: ShaoY_2019_ERR3404906_bin.6_k141_9599_148
Type:
Location: 163838 - 164932 (-)
Type:
Location: 163838 - 164932 (-)
Gene ID: ShaoY_2019_ERR3404906_bin.6_k141_9599_149
Type: TC
Location: 165201 - 166043 (+)
Type: TC
Location: 165201 - 166043 (+)
Gene ID: ShaoY_2019_ERR3404906_bin.6_k141_9599_150
Type: TC
Location: 166134 - 166820 (+)
Type: TC
Location: 166134 - 166820 (+)
Gene ID: ShaoY_2019_ERR3404906_bin.6_k141_9599_151
Type: TC
Location: 166807 - 167529 (+)
Type: TC
Location: 166807 - 167529 (+)
Gene ID: ShaoY_2019_ERR3404906_bin.6_k141_9599_152
Type: CAZyme
Location: 167550 - 169037 (+)
Type: CAZyme
Location: 167550 - 169037 (+)
Gene ID: ShaoY_2019_ERR3404906_bin.6_k141_9599_153
Type: CAZyme
Location: 169139 - 171133 (+)
Type: CAZyme
Location: 169139 - 171133 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Clostridiales
Family
Clostridiaceae
Genus
Clostridium
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.