Cluster: ShaoY_2019_ERR3404906_bin.6_CGC40
🧬 Cluster Details
- Gene Count: 11
- CAZyme Count: 2
- Substrate:
- Genome ID: ShaoY_2019_ERR3404906_bin.6
- Continent: Europe
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | ShaoY_2019_ERR3404906_bin.6_k141_9599 | ShaoY_2019_ERR3404906_bin.6_k141_9599_92 | 105627 | 107516 | + | GT2 |
| pfam | ShaoY_2019_ERR3404906_bin.6_k141_9599 | ShaoY_2019_ERR3404906_bin.6_k141_9599_93 | 108251 | 108532 | + | Y1_Tnp |
| STP | ShaoY_2019_ERR3404906_bin.6_k141_9599 | ShaoY_2019_ERR3404906_bin.6_k141_9599_94 | 108920 | 109825 | + | SIS |
| TC | ShaoY_2019_ERR3404906_bin.6_k141_9599 | ShaoY_2019_ERR3404906_bin.6_k141_9599_95 | 109847 | 111208 | + | 4.A.1.2.7 |
| CAZyme | ShaoY_2019_ERR3404906_bin.6_k141_9599 | ShaoY_2019_ERR3404906_bin.6_k141_9599_96 | 111272 | 112351 | + | GH170 |
| TF | ShaoY_2019_ERR3404906_bin.6_k141_9599 | ShaoY_2019_ERR3404906_bin.6_k141_9599_97 | 112366 | 113208 | + | HTH_6 |
| pfam | ShaoY_2019_ERR3404906_bin.6_k141_9599 | ShaoY_2019_ERR3404906_bin.6_k141_9599_98 | 113440 | 115944 | + | FtsX | FtsX |
| TC | ShaoY_2019_ERR3404906_bin.6_k141_9599 | ShaoY_2019_ERR3404906_bin.6_k141_9599_99 | 115965 | 116651 | + | 3.A.1.122.14 |
| pfam | ShaoY_2019_ERR3404906_bin.6_k141_9599 | ShaoY_2019_ERR3404906_bin.6_k141_9599_100 | 116707 | 118122 | - | PK | PK_C |
| TC | ShaoY_2019_ERR3404906_bin.6_k141_9599 | ShaoY_2019_ERR3404906_bin.6_k141_9599_101 | 118410 | 119177 | + | 3.A.1.134.12 |
| TC | ShaoY_2019_ERR3404906_bin.6_k141_9599 | ShaoY_2019_ERR3404906_bin.6_k141_9599_102 | 119167 | 121149 | + | 3.A.1.134.11 |
Gene ID: ShaoY_2019_ERR3404906_bin.6_k141_9599_92
Type: CAZyme
Location: 105627 - 107516 (+)
Type: CAZyme
Location: 105627 - 107516 (+)
Gene ID: ShaoY_2019_ERR3404906_bin.6_k141_9599_93
Type: pfam
Location: 108251 - 108532 (+)
Type: pfam
Location: 108251 - 108532 (+)
Gene ID: ShaoY_2019_ERR3404906_bin.6_k141_9599_94
Type: STP
Location: 108920 - 109825 (+)
Type: STP
Location: 108920 - 109825 (+)
Gene ID: ShaoY_2019_ERR3404906_bin.6_k141_9599_95
Type: TC
Location: 109847 - 111208 (+)
Type: TC
Location: 109847 - 111208 (+)
Gene ID: ShaoY_2019_ERR3404906_bin.6_k141_9599_96
Type: CAZyme
Location: 111272 - 112351 (+)
Type: CAZyme
Location: 111272 - 112351 (+)
Gene ID: ShaoY_2019_ERR3404906_bin.6_k141_9599_97
Type: TF
Location: 112366 - 113208 (+)
Type: TF
Location: 112366 - 113208 (+)
Gene ID: ShaoY_2019_ERR3404906_bin.6_k141_9599_98
Type: pfam
Location: 113440 - 115944 (+)
Type: pfam
Location: 113440 - 115944 (+)
Gene ID: ShaoY_2019_ERR3404906_bin.6_k141_9599_99
Type: TC
Location: 115965 - 116651 (+)
Type: TC
Location: 115965 - 116651 (+)
Gene ID: ShaoY_2019_ERR3404906_bin.6_k141_9599_100
Type: pfam
Location: 116707 - 118122 (-)
Type: pfam
Location: 116707 - 118122 (-)
Gene ID: ShaoY_2019_ERR3404906_bin.6_k141_9599_101
Type: TC
Location: 118410 - 119177 (+)
Type: TC
Location: 118410 - 119177 (+)
Gene ID: ShaoY_2019_ERR3404906_bin.6_k141_9599_102
Type: TC
Location: 119167 - 121149 (+)
Type: TC
Location: 119167 - 121149 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Clostridiales
Family
Clostridiaceae
Genus
Clostridium
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.