Cluster: ShaoY_2019_ERR3404906_bin.6_CGC39
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 1
- Substrate:
- Genome ID: ShaoY_2019_ERR3404906_bin.6
- Continent: Europe
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | ShaoY_2019_ERR3404906_bin.6_k141_9599 | ShaoY_2019_ERR3404906_bin.6_k141_9599_78 | 86370 | 87302 | - | 9.B.211.1.2 |
| pfam | ShaoY_2019_ERR3404906_bin.6_k141_9599 | ShaoY_2019_ERR3404906_bin.6_k141_9599_79 | 87327 | 87992 | - | DUF969 |
| pfam | ShaoY_2019_ERR3404906_bin.6_k141_9599 | ShaoY_2019_ERR3404906_bin.6_k141_9599_80 | 89131 | 93738 | + | Collagen_bind | SpaA | SpaA | SpaA | SpaA | SpaA | SpaA | SpaA | SpaA | SpaA |
| CAZyme | ShaoY_2019_ERR3404906_bin.6_k141_9599 | ShaoY_2019_ERR3404906_bin.6_k141_9599_81 | 93823 | 95823 | - | GH18 |
Gene ID: ShaoY_2019_ERR3404906_bin.6_k141_9599_78
Type: TC
Location: 86370 - 87302 (-)
Type: TC
Location: 86370 - 87302 (-)
Gene ID: ShaoY_2019_ERR3404906_bin.6_k141_9599_79
Type: pfam
Location: 87327 - 87992 (-)
Type: pfam
Location: 87327 - 87992 (-)
Gene ID: ShaoY_2019_ERR3404906_bin.6_k141_9599_80
Type: pfam
Location: 89131 - 93738 (+)
Type: pfam
Location: 89131 - 93738 (+)
Gene ID: ShaoY_2019_ERR3404906_bin.6_k141_9599_81
Type: CAZyme
Location: 93823 - 95823 (-)
Type: CAZyme
Location: 93823 - 95823 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Clostridiales
Family
Clostridiaceae
Genus
Clostridium
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.