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Cluster: ShaoY_2019_ERR3404906_bin.6_CGC32

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC ShaoY_2019_ERR3404906_bin.6_k141_7270 ShaoY_2019_ERR3404906_bin.6_k141_7270_100 105082 106653 - 3.A.18.1.1
pfam ShaoY_2019_ERR3404906_bin.6_k141_7270 ShaoY_2019_ERR3404906_bin.6_k141_7270_101 106923 107579 + dNK
pfam ShaoY_2019_ERR3404906_bin.6_k141_7270 ShaoY_2019_ERR3404906_bin.6_k141_7270_102 107634 108011 + bPH_1 | bPH_3
CAZyme ShaoY_2019_ERR3404906_bin.6_k141_7270 ShaoY_2019_ERR3404906_bin.6_k141_7270_103 108171 109739 - CBM13 | GH53
TF ShaoY_2019_ERR3404906_bin.6_k141_7270 ShaoY_2019_ERR3404906_bin.6_k141_7270_104 110248 111003 + HTH_DeoR
TC ShaoY_2019_ERR3404906_bin.6_k141_7270 ShaoY_2019_ERR3404906_bin.6_k141_7270_105 111199 111513 + 4.A.3.1.3
TC ShaoY_2019_ERR3404906_bin.6_k141_7270 ShaoY_2019_ERR3404906_bin.6_k141_7270_106 111578 113230 + 4.A.3.1.1
CAZyme ShaoY_2019_ERR3404906_bin.6_k141_7270 ShaoY_2019_ERR3404906_bin.6_k141_7270_107 113282 114709 + GH1
pfam ShaoY_2019_ERR3404906_bin.6_k141_7270 ShaoY_2019_ERR3404906_bin.6_k141_7270_108 114813 116720 - CN_hydrolase | NAD_synthase
pfam ShaoY_2019_ERR3404906_bin.6_k141_7270 ShaoY_2019_ERR3404906_bin.6_k141_7270_109 116993 117427 + NfeD
TC ShaoY_2019_ERR3404906_bin.6_k141_7270 ShaoY_2019_ERR3404906_bin.6_k141_7270_110 117430 118374 + 8.A.21.2.2
NULL(UNKNOWN) ShaoY_2019_ERR3404906_bin.6_k141_7270 ShaoY_2019_ERR3404906_bin.6_k141_7270_111 118653 118991 + NULL(UNKNOWN)
[View Structural Homologs]
TC ShaoY_2019_ERR3404906_bin.6_k141_7270 ShaoY_2019_ERR3404906_bin.6_k141_7270_112 119080 119889 + 3.A.1.3.27
TC ShaoY_2019_ERR3404906_bin.6_k141_7270 ShaoY_2019_ERR3404906_bin.6_k141_7270_113 119889 120530 + 3.A.1.3.12
TC ShaoY_2019_ERR3404906_bin.6_k141_7270 ShaoY_2019_ERR3404906_bin.6_k141_7270_114 120542 121210 + 3.A.1.3.9
Gene ID: ShaoY_2019_ERR3404906_bin.6_k141_7270_100
Type: TC
Location: 105082 - 106653 (-)
Gene ID: ShaoY_2019_ERR3404906_bin.6_k141_7270_101
Type: pfam
Location: 106923 - 107579 (+)
Gene ID: ShaoY_2019_ERR3404906_bin.6_k141_7270_102
Type: pfam
Location: 107634 - 108011 (+)
Gene ID: ShaoY_2019_ERR3404906_bin.6_k141_7270_103
Type: CAZyme
Location: 108171 - 109739 (-)
Gene ID: ShaoY_2019_ERR3404906_bin.6_k141_7270_104
Type: TF
Location: 110248 - 111003 (+)
Gene ID: ShaoY_2019_ERR3404906_bin.6_k141_7270_105
Type: TC
Location: 111199 - 111513 (+)
Gene ID: ShaoY_2019_ERR3404906_bin.6_k141_7270_106
Type: TC
Location: 111578 - 113230 (+)
Gene ID: ShaoY_2019_ERR3404906_bin.6_k141_7270_107
Type: CAZyme
Location: 113282 - 114709 (+)
Gene ID: ShaoY_2019_ERR3404906_bin.6_k141_7270_108
Type: pfam
Location: 114813 - 116720 (-)
Gene ID: ShaoY_2019_ERR3404906_bin.6_k141_7270_109
Type: pfam
Location: 116993 - 117427 (+)
Gene ID: ShaoY_2019_ERR3404906_bin.6_k141_7270_110
Type: TC
Location: 117430 - 118374 (+)
Gene ID: ShaoY_2019_ERR3404906_bin.6_k141_7270_111
Type:
Location: 118653 - 118991 (+)
Gene ID: ShaoY_2019_ERR3404906_bin.6_k141_7270_112
Type: TC
Location: 119080 - 119889 (+)
Gene ID: ShaoY_2019_ERR3404906_bin.6_k141_7270_113
Type: TC
Location: 119889 - 120530 (+)
Gene ID: ShaoY_2019_ERR3404906_bin.6_k141_7270_114
Type: TC
Location: 120542 - 121210 (+)

Taxonomic Lineage

Domain
Bacteria
→
Phylum
Bacillota_A
→
Class
Clostridia
→
Order
Clostridiales
→
Family
Clostridiaceae
→
Genus
Clostridium
→

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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