Cluster: ShaoY_2019_ERR3404906_bin.6_CGC30
🧬 Cluster Details
- Gene Count: 14
- CAZyme Count: 2
- Substrate:
- Genome ID: ShaoY_2019_ERR3404906_bin.6
- Continent: Europe
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | ShaoY_2019_ERR3404906_bin.6_k141_7270 | ShaoY_2019_ERR3404906_bin.6_k141_7270_21 | 19358 | 19900 | + | GH23 |
| CAZyme | ShaoY_2019_ERR3404906_bin.6_k141_7270 | ShaoY_2019_ERR3404906_bin.6_k141_7270_22 | 20016 | 21143 | + | GH126 |
| TC | ShaoY_2019_ERR3404906_bin.6_k141_7270 | ShaoY_2019_ERR3404906_bin.6_k141_7270_23 | 21336 | 23492 | + | 9.B.74.1.1 |
| peptidase | ShaoY_2019_ERR3404906_bin.6_k141_7270 | ShaoY_2019_ERR3404906_bin.6_k141_7270_24 | 23588 | 24505 | + | S33.UPW |
| TC | ShaoY_2019_ERR3404906_bin.6_k141_7270 | ShaoY_2019_ERR3404906_bin.6_k141_7270_25 | 24624 | 26657 | + | 4.A.1.1.9 |
| STP | ShaoY_2019_ERR3404906_bin.6_k141_7270 | ShaoY_2019_ERR3404906_bin.6_k141_7270_26 | 26766 | 28691 | + | HATPase_c | HisKA |
| STP | ShaoY_2019_ERR3404906_bin.6_k141_7270 | ShaoY_2019_ERR3404906_bin.6_k141_7270_27 | 28700 | 30721 | + | HATPase_c | HisKA |
| TC | ShaoY_2019_ERR3404906_bin.6_k141_7270 | ShaoY_2019_ERR3404906_bin.6_k141_7270_28 | 30785 | 31285 | + | 9.A.24.1.7 |
| TC | ShaoY_2019_ERR3404906_bin.6_k141_7270 | ShaoY_2019_ERR3404906_bin.6_k141_7270_29 | 31383 | 33542 | + | 3.A.7.7.1 |
| pfam | ShaoY_2019_ERR3404906_bin.6_k141_7270 | ShaoY_2019_ERR3404906_bin.6_k141_7270_30 | 33549 | 34004 | + | LMWPc |
| TC | ShaoY_2019_ERR3404906_bin.6_k141_7270 | ShaoY_2019_ERR3404906_bin.6_k141_7270_31 | 34112 | 34828 | - | 2.A.122.1.4 |
| TC | ShaoY_2019_ERR3404906_bin.6_k141_7270 | ShaoY_2019_ERR3404906_bin.6_k141_7270_32 | 34812 | 35198 | - | 1.E.14.1.17 |
| TC | ShaoY_2019_ERR3404906_bin.6_k141_7270 | ShaoY_2019_ERR3404906_bin.6_k141_7270_33 | 35384 | 36172 | - | 3.A.1.17.3 |
| TC | ShaoY_2019_ERR3404906_bin.6_k141_7270 | ShaoY_2019_ERR3404906_bin.6_k141_7270_34 | 36162 | 36929 | - | 3.A.1.16.1 |
Gene ID: ShaoY_2019_ERR3404906_bin.6_k141_7270_21
Type: CAZyme
Location: 19358 - 19900 (+)
Type: CAZyme
Location: 19358 - 19900 (+)
Gene ID: ShaoY_2019_ERR3404906_bin.6_k141_7270_22
Type: CAZyme
Location: 20016 - 21143 (+)
Type: CAZyme
Location: 20016 - 21143 (+)
Gene ID: ShaoY_2019_ERR3404906_bin.6_k141_7270_23
Type: TC
Location: 21336 - 23492 (+)
Type: TC
Location: 21336 - 23492 (+)
Gene ID: ShaoY_2019_ERR3404906_bin.6_k141_7270_24
Type: peptidase
Location: 23588 - 24505 (+)
Type: peptidase
Location: 23588 - 24505 (+)
Gene ID: ShaoY_2019_ERR3404906_bin.6_k141_7270_25
Type: TC
Location: 24624 - 26657 (+)
Type: TC
Location: 24624 - 26657 (+)
Gene ID: ShaoY_2019_ERR3404906_bin.6_k141_7270_26
Type: STP
Location: 26766 - 28691 (+)
Type: STP
Location: 26766 - 28691 (+)
Gene ID: ShaoY_2019_ERR3404906_bin.6_k141_7270_27
Type: STP
Location: 28700 - 30721 (+)
Type: STP
Location: 28700 - 30721 (+)
Gene ID: ShaoY_2019_ERR3404906_bin.6_k141_7270_28
Type: TC
Location: 30785 - 31285 (+)
Type: TC
Location: 30785 - 31285 (+)
Gene ID: ShaoY_2019_ERR3404906_bin.6_k141_7270_29
Type: TC
Location: 31383 - 33542 (+)
Type: TC
Location: 31383 - 33542 (+)
Gene ID: ShaoY_2019_ERR3404906_bin.6_k141_7270_30
Type: pfam
Location: 33549 - 34004 (+)
Type: pfam
Location: 33549 - 34004 (+)
Gene ID: ShaoY_2019_ERR3404906_bin.6_k141_7270_31
Type: TC
Location: 34112 - 34828 (-)
Type: TC
Location: 34112 - 34828 (-)
Gene ID: ShaoY_2019_ERR3404906_bin.6_k141_7270_32
Type: TC
Location: 34812 - 35198 (-)
Type: TC
Location: 34812 - 35198 (-)
Gene ID: ShaoY_2019_ERR3404906_bin.6_k141_7270_33
Type: TC
Location: 35384 - 36172 (-)
Type: TC
Location: 35384 - 36172 (-)
Gene ID: ShaoY_2019_ERR3404906_bin.6_k141_7270_34
Type: TC
Location: 36162 - 36929 (-)
Type: TC
Location: 36162 - 36929 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Clostridiales
Family
Clostridiaceae
Genus
Clostridium
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.