Cluster: ShaoY_2019_ERR3404906_bin.6_CGC29
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 1
- Substrate:
- Genome ID: ShaoY_2019_ERR3404906_bin.6
- Continent: Europe
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | ShaoY_2019_ERR3404906_bin.6_k141_7185 | ShaoY_2019_ERR3404906_bin.6_k141_7185_38 | 47907 | 49295 | + | 4.A.2.1.19 |
| TC | ShaoY_2019_ERR3404906_bin.6_k141_7185 | ShaoY_2019_ERR3404906_bin.6_k141_7185_39 | 49315 | 49761 | + | 4.A.2.1.4 |
| pfam | ShaoY_2019_ERR3404906_bin.6_k141_7185 | ShaoY_2019_ERR3404906_bin.6_k141_7185_40 | 49938 | 51317 | - | DUF4317 |
| TF | ShaoY_2019_ERR3404906_bin.6_k141_7185 | ShaoY_2019_ERR3404906_bin.6_k141_7185_41 | 51632 | 52369 | + | HTH_DeoR |
| CAZyme | ShaoY_2019_ERR3404906_bin.6_k141_7185 | ShaoY_2019_ERR3404906_bin.6_k141_7185_42 | 52542 | 53996 | + | GH1 |
| TC | ShaoY_2019_ERR3404906_bin.6_k141_7185 | ShaoY_2019_ERR3404906_bin.6_k141_7185_43 | 54065 | 55726 | - | 3.A.1.121.2 |
Gene ID: ShaoY_2019_ERR3404906_bin.6_k141_7185_38
Type: TC
Location: 47907 - 49295 (+)
Type: TC
Location: 47907 - 49295 (+)
Gene ID: ShaoY_2019_ERR3404906_bin.6_k141_7185_39
Type: TC
Location: 49315 - 49761 (+)
Type: TC
Location: 49315 - 49761 (+)
Gene ID: ShaoY_2019_ERR3404906_bin.6_k141_7185_40
Type: pfam
Location: 49938 - 51317 (-)
Type: pfam
Location: 49938 - 51317 (-)
Gene ID: ShaoY_2019_ERR3404906_bin.6_k141_7185_41
Type: TF
Location: 51632 - 52369 (+)
Type: TF
Location: 51632 - 52369 (+)
Gene ID: ShaoY_2019_ERR3404906_bin.6_k141_7185_42
Type: CAZyme
Location: 52542 - 53996 (+)
Type: CAZyme
Location: 52542 - 53996 (+)
Gene ID: ShaoY_2019_ERR3404906_bin.6_k141_7185_43
Type: TC
Location: 54065 - 55726 (-)
Type: TC
Location: 54065 - 55726 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Clostridiales
Family
Clostridiaceae
Genus
Clostridium
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.