Cluster: ShaoY_2019_ERR3404906_bin.6_CGC28
🧬 Cluster Details
- Gene Count: 8
- CAZyme Count: 1
- Substrate:
- Genome ID: ShaoY_2019_ERR3404906_bin.6
- Continent: Europe
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | ShaoY_2019_ERR3404906_bin.6_k141_6148 | ShaoY_2019_ERR3404906_bin.6_k141_6148_23 | 23645 | 24655 | - | CE4 |
| pfam | ShaoY_2019_ERR3404906_bin.6_k141_6148 | ShaoY_2019_ERR3404906_bin.6_k141_6148_24 | 24956 | 25819 | + | F_bP_aldolase |
| TC | ShaoY_2019_ERR3404906_bin.6_k141_6148 | ShaoY_2019_ERR3404906_bin.6_k141_6148_25 | 25918 | 27081 | - | 2.A.86.1.8 |
| NULL(UNKNOWN) | ShaoY_2019_ERR3404906_bin.6_k141_6148 | ShaoY_2019_ERR3404906_bin.6_k141_6148_26 | 27131 | 27541 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | ShaoY_2019_ERR3404906_bin.6_k141_6148 | ShaoY_2019_ERR3404906_bin.6_k141_6148_27 | 27664 | 29313 | - | 3.A.1.121.2 |
| TC | ShaoY_2019_ERR3404906_bin.6_k141_6148 | ShaoY_2019_ERR3404906_bin.6_k141_6148_28 | 29405 | 30544 | - | 3.A.1.142.1 |
| TC | ShaoY_2019_ERR3404906_bin.6_k141_6148 | ShaoY_2019_ERR3404906_bin.6_k141_6148_29 | 30541 | 31659 | - | 3.A.1.105.7 |
| TC | ShaoY_2019_ERR3404906_bin.6_k141_6148 | ShaoY_2019_ERR3404906_bin.6_k141_6148_30 | 31674 | 32609 | - | 3.A.1.105.9 |
Gene ID: ShaoY_2019_ERR3404906_bin.6_k141_6148_23
Type: CAZyme
Location: 23645 - 24655 (-)
Type: CAZyme
Location: 23645 - 24655 (-)
Gene ID: ShaoY_2019_ERR3404906_bin.6_k141_6148_24
Type: pfam
Location: 24956 - 25819 (+)
Type: pfam
Location: 24956 - 25819 (+)
Gene ID: ShaoY_2019_ERR3404906_bin.6_k141_6148_25
Type: TC
Location: 25918 - 27081 (-)
Type: TC
Location: 25918 - 27081 (-)
Gene ID: ShaoY_2019_ERR3404906_bin.6_k141_6148_26
Type:
Location: 27131 - 27541 (-)
Type:
Location: 27131 - 27541 (-)
Gene ID: ShaoY_2019_ERR3404906_bin.6_k141_6148_27
Type: TC
Location: 27664 - 29313 (-)
Type: TC
Location: 27664 - 29313 (-)
Gene ID: ShaoY_2019_ERR3404906_bin.6_k141_6148_28
Type: TC
Location: 29405 - 30544 (-)
Type: TC
Location: 29405 - 30544 (-)
Gene ID: ShaoY_2019_ERR3404906_bin.6_k141_6148_29
Type: TC
Location: 30541 - 31659 (-)
Type: TC
Location: 30541 - 31659 (-)
Gene ID: ShaoY_2019_ERR3404906_bin.6_k141_6148_30
Type: TC
Location: 31674 - 32609 (-)
Type: TC
Location: 31674 - 32609 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Clostridiales
Family
Clostridiaceae
Genus
Clostridium
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.