Cluster: ShaoY_2019_ERR3404906_bin.6_CGC25
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 2
- Substrate:
- Genome ID: ShaoY_2019_ERR3404906_bin.6
- CGC Family ID: CGCFAM_05566
- Continent: Europe
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | ShaoY_2019_ERR3404906_bin.6_k141_5966 | ShaoY_2019_ERR3404906_bin.6_k141_5966_58 | 57531 | 58865 | - | GH4 |
| CAZyme | ShaoY_2019_ERR3404906_bin.6_k141_5966 | ShaoY_2019_ERR3404906_bin.6_k141_5966_59 | 58967 | 60058 | - | GH170 |
| pfam | ShaoY_2019_ERR3404906_bin.6_k141_5966 | ShaoY_2019_ERR3404906_bin.6_k141_5966_60 | 60091 | 60981 | - | BcrAD_BadFG |
| TC | ShaoY_2019_ERR3404906_bin.6_k141_5966 | ShaoY_2019_ERR3404906_bin.6_k141_5966_61 | 61055 | 61351 | - | 4.A.3.2.2 |
| TC | ShaoY_2019_ERR3404906_bin.6_k141_5966 | ShaoY_2019_ERR3404906_bin.6_k141_5966_62 | 61433 | 61744 | - | 4.A.3.2.2 |
| TF | ShaoY_2019_ERR3404906_bin.6_k141_5966 | ShaoY_2019_ERR3404906_bin.6_k141_5966_63 | 61995 | 64724 | - | TrmB |
| TC | ShaoY_2019_ERR3404906_bin.6_k141_5966 | ShaoY_2019_ERR3404906_bin.6_k141_5966_64 | 64854 | 66020 | - | 9.B.160.1.10 |
Gene ID: ShaoY_2019_ERR3404906_bin.6_k141_5966_58
Type: CAZyme
Location: 57531 - 58865 (-)
Type: CAZyme
Location: 57531 - 58865 (-)
Gene ID: ShaoY_2019_ERR3404906_bin.6_k141_5966_59
Type: CAZyme
Location: 58967 - 60058 (-)
Type: CAZyme
Location: 58967 - 60058 (-)
Gene ID: ShaoY_2019_ERR3404906_bin.6_k141_5966_60
Type: pfam
Location: 60091 - 60981 (-)
Type: pfam
Location: 60091 - 60981 (-)
Gene ID: ShaoY_2019_ERR3404906_bin.6_k141_5966_61
Type: TC
Location: 61055 - 61351 (-)
Type: TC
Location: 61055 - 61351 (-)
Gene ID: ShaoY_2019_ERR3404906_bin.6_k141_5966_62
Type: TC
Location: 61433 - 61744 (-)
Type: TC
Location: 61433 - 61744 (-)
Gene ID: ShaoY_2019_ERR3404906_bin.6_k141_5966_63
Type: TF
Location: 61995 - 64724 (-)
Type: TF
Location: 61995 - 64724 (-)
Gene ID: ShaoY_2019_ERR3404906_bin.6_k141_5966_64
Type: TC
Location: 64854 - 66020 (-)
Type: TC
Location: 64854 - 66020 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Clostridiales
Family
Clostridiaceae
Genus
Clostridium
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.