Cluster: ShaoY_2019_ERR3404906_bin.6_CGC22
🧬 Cluster Details
- Gene Count: 10
- CAZyme Count: 1
- Substrate:
- Genome ID: ShaoY_2019_ERR3404906_bin.6
- Continent: Europe
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | ShaoY_2019_ERR3404906_bin.6_k141_5935 | ShaoY_2019_ERR3404906_bin.6_k141_5935_1 | 1 | 2490 | - | GH63 |
| TC | ShaoY_2019_ERR3404906_bin.6_k141_5935 | ShaoY_2019_ERR3404906_bin.6_k141_5935_2 | 2963 | 3652 | - | 9.B.20.1.4 |
| TC | ShaoY_2019_ERR3404906_bin.6_k141_5935 | ShaoY_2019_ERR3404906_bin.6_k141_5935_3 | 3745 | 5412 | - | 2.A.81.1.1 |
| STP | ShaoY_2019_ERR3404906_bin.6_k141_5935 | ShaoY_2019_ERR3404906_bin.6_k141_5935_4 | 5460 | 7046 | - | Aminotran_1_2 |
| pfam | ShaoY_2019_ERR3404906_bin.6_k141_5935 | ShaoY_2019_ERR3404906_bin.6_k141_5935_5 | 7476 | 9455 | - | Helicase_C | UVR | ResIII | UvrB | UvrB_inter |
| TC | ShaoY_2019_ERR3404906_bin.6_k141_5935 | ShaoY_2019_ERR3404906_bin.6_k141_5935_6 | 9564 | 10796 | - | 9.B.174.1.1 |
| pfam | ShaoY_2019_ERR3404906_bin.6_k141_5935 | ShaoY_2019_ERR3404906_bin.6_k141_5935_7 | 10961 | 11851 | - | FtsX | FtsX_ECD |
| TC | ShaoY_2019_ERR3404906_bin.6_k141_5935 | ShaoY_2019_ERR3404906_bin.6_k141_5935_8 | 11841 | 12527 | - | 3.A.1.140.1 |
| TC | ShaoY_2019_ERR3404906_bin.6_k141_5935 | ShaoY_2019_ERR3404906_bin.6_k141_5935_9 | 12686 | 13540 | - | 2.A.115.1.5 |
| TC | ShaoY_2019_ERR3404906_bin.6_k141_5935 | ShaoY_2019_ERR3404906_bin.6_k141_5935_10 | 13600 | 14445 | - | 2.A.115.1.5 |
Gene ID: ShaoY_2019_ERR3404906_bin.6_k141_5935_1
Type: CAZyme
Location: 1 - 2490 (-)
Type: CAZyme
Location: 1 - 2490 (-)
Gene ID: ShaoY_2019_ERR3404906_bin.6_k141_5935_2
Type: TC
Location: 2963 - 3652 (-)
Type: TC
Location: 2963 - 3652 (-)
Gene ID: ShaoY_2019_ERR3404906_bin.6_k141_5935_3
Type: TC
Location: 3745 - 5412 (-)
Type: TC
Location: 3745 - 5412 (-)
Gene ID: ShaoY_2019_ERR3404906_bin.6_k141_5935_4
Type: STP
Location: 5460 - 7046 (-)
Type: STP
Location: 5460 - 7046 (-)
Gene ID: ShaoY_2019_ERR3404906_bin.6_k141_5935_5
Type: pfam
Location: 7476 - 9455 (-)
Type: pfam
Location: 7476 - 9455 (-)
Gene ID: ShaoY_2019_ERR3404906_bin.6_k141_5935_6
Type: TC
Location: 9564 - 10796 (-)
Type: TC
Location: 9564 - 10796 (-)
Gene ID: ShaoY_2019_ERR3404906_bin.6_k141_5935_7
Type: pfam
Location: 10961 - 11851 (-)
Type: pfam
Location: 10961 - 11851 (-)
Gene ID: ShaoY_2019_ERR3404906_bin.6_k141_5935_8
Type: TC
Location: 11841 - 12527 (-)
Type: TC
Location: 11841 - 12527 (-)
Gene ID: ShaoY_2019_ERR3404906_bin.6_k141_5935_9
Type: TC
Location: 12686 - 13540 (-)
Type: TC
Location: 12686 - 13540 (-)
Gene ID: ShaoY_2019_ERR3404906_bin.6_k141_5935_10
Type: TC
Location: 13600 - 14445 (-)
Type: TC
Location: 13600 - 14445 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Clostridiales
Family
Clostridiaceae
Genus
Clostridium
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.