Cluster: ShaoY_2019_ERR3404906_bin.6_CGC21
🧬 Cluster Details
- Gene Count: 8
- CAZyme Count: 1
- Substrate:
- Genome ID: ShaoY_2019_ERR3404906_bin.6
- Continent: Europe
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | ShaoY_2019_ERR3404906_bin.6_k141_5888 | ShaoY_2019_ERR3404906_bin.6_k141_5888_34 | 36165 | 36611 | + | 4.A.7.1.2 |
| pfam | ShaoY_2019_ERR3404906_bin.6_k141_5888 | ShaoY_2019_ERR3404906_bin.6_k141_5888_35 | 36686 | 36970 | + | PTS_IIB |
| TC | ShaoY_2019_ERR3404906_bin.6_k141_5888 | ShaoY_2019_ERR3404906_bin.6_k141_5888_36 | 37069 | 38331 | + | 4.A.7.1.4 |
| pfam | ShaoY_2019_ERR3404906_bin.6_k141_5888 | ShaoY_2019_ERR3404906_bin.6_k141_5888_37 | 38394 | 39590 | - | PGA_cap |
| CAZyme | ShaoY_2019_ERR3404906_bin.6_k141_5888 | ShaoY_2019_ERR3404906_bin.6_k141_5888_38 | 39771 | 41180 | + | GH1 |
| pfam | ShaoY_2019_ERR3404906_bin.6_k141_5888 | ShaoY_2019_ERR3404906_bin.6_k141_5888_39 | 41239 | 42033 | - | PG_binding_1 | Amidase_3 |
| NULL(UNKNOWN) | ShaoY_2019_ERR3404906_bin.6_k141_5888 | ShaoY_2019_ERR3404906_bin.6_k141_5888_40 | 42403 | 42513 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | ShaoY_2019_ERR3404906_bin.6_k141_5888 | ShaoY_2019_ERR3404906_bin.6_k141_5888_41 | 42853 | 45507 | + | 3.A.3.4.1 |
Gene ID: ShaoY_2019_ERR3404906_bin.6_k141_5888_34
Type: TC
Location: 36165 - 36611 (+)
Type: TC
Location: 36165 - 36611 (+)
Gene ID: ShaoY_2019_ERR3404906_bin.6_k141_5888_35
Type: pfam
Location: 36686 - 36970 (+)
Type: pfam
Location: 36686 - 36970 (+)
Gene ID: ShaoY_2019_ERR3404906_bin.6_k141_5888_36
Type: TC
Location: 37069 - 38331 (+)
Type: TC
Location: 37069 - 38331 (+)
Gene ID: ShaoY_2019_ERR3404906_bin.6_k141_5888_37
Type: pfam
Location: 38394 - 39590 (-)
Type: pfam
Location: 38394 - 39590 (-)
Gene ID: ShaoY_2019_ERR3404906_bin.6_k141_5888_38
Type: CAZyme
Location: 39771 - 41180 (+)
Type: CAZyme
Location: 39771 - 41180 (+)
Gene ID: ShaoY_2019_ERR3404906_bin.6_k141_5888_39
Type: pfam
Location: 41239 - 42033 (-)
Type: pfam
Location: 41239 - 42033 (-)
Gene ID: ShaoY_2019_ERR3404906_bin.6_k141_5888_40
Type:
Location: 42403 - 42513 (+)
Type:
Location: 42403 - 42513 (+)
Gene ID: ShaoY_2019_ERR3404906_bin.6_k141_5888_41
Type: TC
Location: 42853 - 45507 (+)
Type: TC
Location: 42853 - 45507 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Clostridiales
Family
Clostridiaceae
Genus
Clostridium
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
Loading chart...
No differentially abundant genes found in the 2019 study.