Cluster: ShaoY_2019_ERR3404906_bin.6_CGC18
🧬 Cluster Details
- Gene Count: 10
- CAZyme Count: 1
- Substrate:
- Genome ID: ShaoY_2019_ERR3404906_bin.6
- Continent: Europe
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | ShaoY_2019_ERR3404906_bin.6_k141_4655 | ShaoY_2019_ERR3404906_bin.6_k141_4655_48 | 40508 | 41611 | - | 3.A.18.1.1 |
| NULL(UNKNOWN) | ShaoY_2019_ERR3404906_bin.6_k141_4655 | ShaoY_2019_ERR3404906_bin.6_k141_4655_49 | 41852 | 42247 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| pfam | ShaoY_2019_ERR3404906_bin.6_k141_4655 | ShaoY_2019_ERR3404906_bin.6_k141_4655_50 | 42292 | 43143 | - | Patatin | DUF6363 |
| TC | ShaoY_2019_ERR3404906_bin.6_k141_4655 | ShaoY_2019_ERR3404906_bin.6_k141_4655_51 | 43283 | 43975 | + | 9.B.114.1.1 |
| TC | ShaoY_2019_ERR3404906_bin.6_k141_4655 | ShaoY_2019_ERR3404906_bin.6_k141_4655_52 | 44245 | 45615 | + | 2.A.40.2.1 |
| pfam | ShaoY_2019_ERR3404906_bin.6_k141_4655 | ShaoY_2019_ERR3404906_bin.6_k141_4655_53 | 45951 | 46781 | + | KduI |
| CAZyme | ShaoY_2019_ERR3404906_bin.6_k141_4655 | ShaoY_2019_ERR3404906_bin.6_k141_4655_54 | 46803 | 47993 | + | GH88 |
| TC | ShaoY_2019_ERR3404906_bin.6_k141_4655 | ShaoY_2019_ERR3404906_bin.6_k141_4655_55 | 48008 | 48502 | + | 4.A.6.1.14 |
| TC | ShaoY_2019_ERR3404906_bin.6_k141_4655 | ShaoY_2019_ERR3404906_bin.6_k141_4655_56 | 48573 | 49370 | + | 4.A.6.1.14 |
| TC | ShaoY_2019_ERR3404906_bin.6_k141_4655 | ShaoY_2019_ERR3404906_bin.6_k141_4655_57 | 49360 | 50172 | + | 4.A.6.1.14 |
Gene ID: ShaoY_2019_ERR3404906_bin.6_k141_4655_48
Type: TC
Location: 40508 - 41611 (-)
Type: TC
Location: 40508 - 41611 (-)
Gene ID: ShaoY_2019_ERR3404906_bin.6_k141_4655_49
Type:
Location: 41852 - 42247 (+)
Type:
Location: 41852 - 42247 (+)
Gene ID: ShaoY_2019_ERR3404906_bin.6_k141_4655_50
Type: pfam
Location: 42292 - 43143 (-)
Type: pfam
Location: 42292 - 43143 (-)
Gene ID: ShaoY_2019_ERR3404906_bin.6_k141_4655_51
Type: TC
Location: 43283 - 43975 (+)
Type: TC
Location: 43283 - 43975 (+)
Gene ID: ShaoY_2019_ERR3404906_bin.6_k141_4655_52
Type: TC
Location: 44245 - 45615 (+)
Type: TC
Location: 44245 - 45615 (+)
Gene ID: ShaoY_2019_ERR3404906_bin.6_k141_4655_53
Type: pfam
Location: 45951 - 46781 (+)
Type: pfam
Location: 45951 - 46781 (+)
Gene ID: ShaoY_2019_ERR3404906_bin.6_k141_4655_54
Type: CAZyme
Location: 46803 - 47993 (+)
Type: CAZyme
Location: 46803 - 47993 (+)
Gene ID: ShaoY_2019_ERR3404906_bin.6_k141_4655_55
Type: TC
Location: 48008 - 48502 (+)
Type: TC
Location: 48008 - 48502 (+)
Gene ID: ShaoY_2019_ERR3404906_bin.6_k141_4655_56
Type: TC
Location: 48573 - 49370 (+)
Type: TC
Location: 48573 - 49370 (+)
Gene ID: ShaoY_2019_ERR3404906_bin.6_k141_4655_57
Type: TC
Location: 49360 - 50172 (+)
Type: TC
Location: 49360 - 50172 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Clostridiales
Family
Clostridiaceae
Genus
Clostridium
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.