Cluster: ShaoY_2019_ERR3404906_bin.6_CGC13
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 1
- Substrate:
- Genome ID: ShaoY_2019_ERR3404906_bin.6
- Continent: Europe
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | ShaoY_2019_ERR3404906_bin.6_k141_3568 | ShaoY_2019_ERR3404906_bin.6_k141_3568_118 | 138060 | 138371 | + | 4.A.3.2.6 |
| TC | ShaoY_2019_ERR3404906_bin.6_k141_3568 | ShaoY_2019_ERR3404906_bin.6_k141_3568_119 | 138426 | 139646 | + | 4.A.3.2.3 |
| pfam | ShaoY_2019_ERR3404906_bin.6_k141_3568 | ShaoY_2019_ERR3404906_bin.6_k141_3568_120 | 139667 | 140014 | + | PTS_IIA |
| CAZyme | ShaoY_2019_ERR3404906_bin.6_k141_3568 | ShaoY_2019_ERR3404906_bin.6_k141_3568_121 | 140007 | 141443 | + | GH1 |
Gene ID: ShaoY_2019_ERR3404906_bin.6_k141_3568_118
Type: TC
Location: 138060 - 138371 (+)
Type: TC
Location: 138060 - 138371 (+)
Gene ID: ShaoY_2019_ERR3404906_bin.6_k141_3568_119
Type: TC
Location: 138426 - 139646 (+)
Type: TC
Location: 138426 - 139646 (+)
Gene ID: ShaoY_2019_ERR3404906_bin.6_k141_3568_120
Type: pfam
Location: 139667 - 140014 (+)
Type: pfam
Location: 139667 - 140014 (+)
Gene ID: ShaoY_2019_ERR3404906_bin.6_k141_3568_121
Type: CAZyme
Location: 140007 - 141443 (+)
Type: CAZyme
Location: 140007 - 141443 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Clostridiales
Family
Clostridiaceae
Genus
Clostridium
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.