Cluster: ShaoY_2019_ERR3404906_bin.10_CGC47
🧬 Cluster Details
- Gene Count: 12
- CAZyme Count: 2
- Substrate:
- Genome ID: ShaoY_2019_ERR3404906_bin.10
- Continent: Europe
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | ShaoY_2019_ERR3404906_bin.10_k141_8030 | ShaoY_2019_ERR3404906_bin.10_k141_8030_1 | 478 | 1437 | - | GT108 |
| TF | ShaoY_2019_ERR3404906_bin.10_k141_8030 | ShaoY_2019_ERR3404906_bin.10_k141_8030_2 | 1437 | 2486 | - | LacI |
| TC | ShaoY_2019_ERR3404906_bin.10_k141_8030 | ShaoY_2019_ERR3404906_bin.10_k141_8030_3 | 2510 | 3334 | - | 3.A.1.1.25 |
| TC | ShaoY_2019_ERR3404906_bin.10_k141_8030 | ShaoY_2019_ERR3404906_bin.10_k141_8030_4 | 3346 | 4251 | - | 3.A.1.1.35 |
| NULL(UNKNOWN) | ShaoY_2019_ERR3404906_bin.10_k141_8030 | ShaoY_2019_ERR3404906_bin.10_k141_8030_5 | 4310 | 5725 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| pfam | ShaoY_2019_ERR3404906_bin.10_k141_8030 | ShaoY_2019_ERR3404906_bin.10_k141_8030_6 | 5870 | 6700 | - | Lactamase_B | Lactamase_B_2 |
| CAZyme | ShaoY_2019_ERR3404906_bin.10_k141_8030 | ShaoY_2019_ERR3404906_bin.10_k141_8030_7 | 7071 | 9341 | - | GH2 |
| TC | ShaoY_2019_ERR3404906_bin.10_k141_8030 | ShaoY_2019_ERR3404906_bin.10_k141_8030_8 | 9352 | 10179 | - | 3.A.1.1.18 |
| TC | ShaoY_2019_ERR3404906_bin.10_k141_8030 | ShaoY_2019_ERR3404906_bin.10_k141_8030_9 | 10172 | 11071 | - | 3.A.1.1.32 |
| STP | ShaoY_2019_ERR3404906_bin.10_k141_8030 | ShaoY_2019_ERR3404906_bin.10_k141_8030_10 | 11083 | 12432 | - | SBP_bac_1 |
| TF | ShaoY_2019_ERR3404906_bin.10_k141_8030 | ShaoY_2019_ERR3404906_bin.10_k141_8030_11 | 12511 | 14073 | - | HTH_AraC | HTH_AraC |
| TC | ShaoY_2019_ERR3404906_bin.10_k141_8030 | ShaoY_2019_ERR3404906_bin.10_k141_8030_12 | 14099 | 15895 | - | 9.B.33.1.1 |
Gene ID: ShaoY_2019_ERR3404906_bin.10_k141_8030_1
Type: CAZyme
Location: 478 - 1437 (-)
Type: CAZyme
Location: 478 - 1437 (-)
Gene ID: ShaoY_2019_ERR3404906_bin.10_k141_8030_2
Type: TF
Location: 1437 - 2486 (-)
Type: TF
Location: 1437 - 2486 (-)
Gene ID: ShaoY_2019_ERR3404906_bin.10_k141_8030_3
Type: TC
Location: 2510 - 3334 (-)
Type: TC
Location: 2510 - 3334 (-)
Gene ID: ShaoY_2019_ERR3404906_bin.10_k141_8030_4
Type: TC
Location: 3346 - 4251 (-)
Type: TC
Location: 3346 - 4251 (-)
Gene ID: ShaoY_2019_ERR3404906_bin.10_k141_8030_5
Type:
Location: 4310 - 5725 (-)
Type:
Location: 4310 - 5725 (-)
Gene ID: ShaoY_2019_ERR3404906_bin.10_k141_8030_6
Type: pfam
Location: 5870 - 6700 (-)
Type: pfam
Location: 5870 - 6700 (-)
Gene ID: ShaoY_2019_ERR3404906_bin.10_k141_8030_7
Type: CAZyme
Location: 7071 - 9341 (-)
Type: CAZyme
Location: 7071 - 9341 (-)
Gene ID: ShaoY_2019_ERR3404906_bin.10_k141_8030_8
Type: TC
Location: 9352 - 10179 (-)
Type: TC
Location: 9352 - 10179 (-)
Gene ID: ShaoY_2019_ERR3404906_bin.10_k141_8030_9
Type: TC
Location: 10172 - 11071 (-)
Type: TC
Location: 10172 - 11071 (-)
Gene ID: ShaoY_2019_ERR3404906_bin.10_k141_8030_10
Type: STP
Location: 11083 - 12432 (-)
Type: STP
Location: 11083 - 12432 (-)
Gene ID: ShaoY_2019_ERR3404906_bin.10_k141_8030_11
Type: TF
Location: 12511 - 14073 (-)
Type: TF
Location: 12511 - 14073 (-)
Gene ID: ShaoY_2019_ERR3404906_bin.10_k141_8030_12
Type: TC
Location: 14099 - 15895 (-)
Type: TC
Location: 14099 - 15895 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Lacrimispora
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.