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Cluster: ShaoY_2019_ERR3404835_bin.5_CGC3

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC ShaoY_2019_ERR3404835_bin.5_k141_662 ShaoY_2019_ERR3404835_bin.5_k141_662_1 185 1519 - 2.A.49.5.5
NULL(UNKNOWN) ShaoY_2019_ERR3404835_bin.5_k141_662 ShaoY_2019_ERR3404835_bin.5_k141_662_2 1686 2036 + NULL(UNKNOWN)
[View Structural Homologs]
TC ShaoY_2019_ERR3404835_bin.5_k141_662 ShaoY_2019_ERR3404835_bin.5_k141_662_3 2191 3408 + 3.A.5.10.1
TC ShaoY_2019_ERR3404835_bin.5_k141_662 ShaoY_2019_ERR3404835_bin.5_k141_662_4 3421 5001 + 3.A.5.10.1
TC ShaoY_2019_ERR3404835_bin.5_k141_662 ShaoY_2019_ERR3404835_bin.5_k141_662_5 4994 6547 + 3.A.5.10.1
NULL(UNKNOWN) ShaoY_2019_ERR3404835_bin.5_k141_662 ShaoY_2019_ERR3404835_bin.5_k141_662_6 6562 6693 + NULL(UNKNOWN)
[View Structural Homologs]
pfam ShaoY_2019_ERR3404835_bin.5_k141_662 ShaoY_2019_ERR3404835_bin.5_k141_662_7 6766 7182 + Sec-ASP3
TC ShaoY_2019_ERR3404835_bin.5_k141_662 ShaoY_2019_ERR3404835_bin.5_k141_662_8 7195 7614 + 3.A.5.10.1
TC ShaoY_2019_ERR3404835_bin.5_k141_662 ShaoY_2019_ERR3404835_bin.5_k141_662_9 7627 9414 + 3.A.5.10.1
NULL(UNKNOWN) ShaoY_2019_ERR3404835_bin.5_k141_662 ShaoY_2019_ERR3404835_bin.5_k141_662_10 9581 9772 + NULL(UNKNOWN)
[View Structural Homologs]
CAZyme ShaoY_2019_ERR3404835_bin.5_k141_662 ShaoY_2019_ERR3404835_bin.5_k141_662_11 9785 11299 + GT4
NULL(UNKNOWN) ShaoY_2019_ERR3404835_bin.5_k141_662 ShaoY_2019_ERR3404835_bin.5_k141_662_12 11292 12626 + NULL(UNKNOWN)
[View Structural Homologs]
CAZyme ShaoY_2019_ERR3404835_bin.5_k141_662 ShaoY_2019_ERR3404835_bin.5_k141_662_13 12630 13844 + GT8
CAZyme ShaoY_2019_ERR3404835_bin.5_k141_662 ShaoY_2019_ERR3404835_bin.5_k141_662_14 13912 14352 + GT8
CAZyme ShaoY_2019_ERR3404835_bin.5_k141_662 ShaoY_2019_ERR3404835_bin.5_k141_662_15 14393 15922 + GT101
Gene ID: ShaoY_2019_ERR3404835_bin.5_k141_662_1
Type: TC
Location: 185 - 1519 (-)
Gene ID: ShaoY_2019_ERR3404835_bin.5_k141_662_2
Type:
Location: 1686 - 2036 (+)
Gene ID: ShaoY_2019_ERR3404835_bin.5_k141_662_3
Type: TC
Location: 2191 - 3408 (+)
Gene ID: ShaoY_2019_ERR3404835_bin.5_k141_662_4
Type: TC
Location: 3421 - 5001 (+)
Gene ID: ShaoY_2019_ERR3404835_bin.5_k141_662_5
Type: TC
Location: 4994 - 6547 (+)
Gene ID: ShaoY_2019_ERR3404835_bin.5_k141_662_6
Type:
Location: 6562 - 6693 (+)
Gene ID: ShaoY_2019_ERR3404835_bin.5_k141_662_7
Type: pfam
Location: 6766 - 7182 (+)
Gene ID: ShaoY_2019_ERR3404835_bin.5_k141_662_8
Type: TC
Location: 7195 - 7614 (+)
Gene ID: ShaoY_2019_ERR3404835_bin.5_k141_662_9
Type: TC
Location: 7627 - 9414 (+)
Gene ID: ShaoY_2019_ERR3404835_bin.5_k141_662_10
Type:
Location: 9581 - 9772 (+)
Gene ID: ShaoY_2019_ERR3404835_bin.5_k141_662_11
Type: CAZyme
Location: 9785 - 11299 (+)
Gene ID: ShaoY_2019_ERR3404835_bin.5_k141_662_12
Type:
Location: 11292 - 12626 (+)
Gene ID: ShaoY_2019_ERR3404835_bin.5_k141_662_13
Type: CAZyme
Location: 12630 - 13844 (+)
Gene ID: ShaoY_2019_ERR3404835_bin.5_k141_662_14
Type: CAZyme
Location: 13912 - 14352 (+)
Gene ID: ShaoY_2019_ERR3404835_bin.5_k141_662_15
Type: CAZyme
Location: 14393 - 15922 (+)

Taxonomic Lineage

Domain
Bacteria
→
Phylum
Bacillota
→
Class
Bacilli
→
Order
Lactobacillales
→
Family
Lactobacillaceae
→
Genus
Limosilactobacillus
→

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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