Cluster: ShaoY_2019_ERR3404835_bin.5_CGC20
🧬 Cluster Details
- Gene Count: 10
- CAZyme Count: 5
- Substrate:
- Genome ID: ShaoY_2019_ERR3404835_bin.5
- CGC Family ID: CGCFAM_03709
- Continent: Europe
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | ShaoY_2019_ERR3404835_bin.5_k141_4482 | ShaoY_2019_ERR3404835_bin.5_k141_4482_87 | 77613 | 78257 | + | 9.B.18.1.2 |
| CAZyme | ShaoY_2019_ERR3404835_bin.5_k141_4482 | ShaoY_2019_ERR3404835_bin.5_k141_4482_88 | 78273 | 79034 | + | GT111 |
| NULL(UNKNOWN) | ShaoY_2019_ERR3404835_bin.5_k141_4482 | ShaoY_2019_ERR3404835_bin.5_k141_4482_89 | 79043 | 80254 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| pfam | ShaoY_2019_ERR3404835_bin.5_k141_4482 | ShaoY_2019_ERR3404835_bin.5_k141_4482_90 | 80214 | 80825 | + | Wzz |
| CAZyme | ShaoY_2019_ERR3404835_bin.5_k141_4482 | ShaoY_2019_ERR3404835_bin.5_k141_4482_91 | 80843 | 81724 | + | GT14 |
| STP | ShaoY_2019_ERR3404835_bin.5_k141_4482 | ShaoY_2019_ERR3404835_bin.5_k141_4482_92 | 81736 | 82854 | + | Pyr_redox |
| TC | ShaoY_2019_ERR3404835_bin.5_k141_4482 | ShaoY_2019_ERR3404835_bin.5_k141_4482_93 | 82961 | 84379 | + | 2.A.66.2.16 |
| CAZyme | ShaoY_2019_ERR3404835_bin.5_k141_4482 | ShaoY_2019_ERR3404835_bin.5_k141_4482_94 | 84381 | 85412 | + | GT4 |
| CAZyme | ShaoY_2019_ERR3404835_bin.5_k141_4482 | ShaoY_2019_ERR3404835_bin.5_k141_4482_95 | 85614 | 87185 | + | GH25 |
| CAZyme | ShaoY_2019_ERR3404835_bin.5_k141_4482 | ShaoY_2019_ERR3404835_bin.5_k141_4482_96 | 87388 | 88878 | + | GH73 |
Gene ID: ShaoY_2019_ERR3404835_bin.5_k141_4482_87
Type: TC
Location: 77613 - 78257 (+)
Type: TC
Location: 77613 - 78257 (+)
Gene ID: ShaoY_2019_ERR3404835_bin.5_k141_4482_88
Type: CAZyme
Location: 78273 - 79034 (+)
Type: CAZyme
Location: 78273 - 79034 (+)
Gene ID: ShaoY_2019_ERR3404835_bin.5_k141_4482_89
Type:
Location: 79043 - 80254 (+)
Type:
Location: 79043 - 80254 (+)
Gene ID: ShaoY_2019_ERR3404835_bin.5_k141_4482_90
Type: pfam
Location: 80214 - 80825 (+)
Type: pfam
Location: 80214 - 80825 (+)
Gene ID: ShaoY_2019_ERR3404835_bin.5_k141_4482_91
Type: CAZyme
Location: 80843 - 81724 (+)
Type: CAZyme
Location: 80843 - 81724 (+)
Gene ID: ShaoY_2019_ERR3404835_bin.5_k141_4482_92
Type: STP
Location: 81736 - 82854 (+)
Type: STP
Location: 81736 - 82854 (+)
Gene ID: ShaoY_2019_ERR3404835_bin.5_k141_4482_93
Type: TC
Location: 82961 - 84379 (+)
Type: TC
Location: 82961 - 84379 (+)
Gene ID: ShaoY_2019_ERR3404835_bin.5_k141_4482_94
Type: CAZyme
Location: 84381 - 85412 (+)
Type: CAZyme
Location: 84381 - 85412 (+)
Gene ID: ShaoY_2019_ERR3404835_bin.5_k141_4482_95
Type: CAZyme
Location: 85614 - 87185 (+)
Type: CAZyme
Location: 85614 - 87185 (+)
Gene ID: ShaoY_2019_ERR3404835_bin.5_k141_4482_96
Type: CAZyme
Location: 87388 - 88878 (+)
Type: CAZyme
Location: 87388 - 88878 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota
Class
Bacilli
Order
Lactobacillales
Family
Lactobacillaceae
Genus
Limosilactobacillus
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
Loading chart...
No differentially abundant genes found in the 2019 study.