Cluster: ShaoY_2019_ERR3404829_bin.1_CGC3
🧬 Cluster Details
- Gene Count: 10
- CAZyme Count: 2
- Substrate:
- Genome ID: ShaoY_2019_ERR3404829_bin.1
- Continent: Europe
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | ShaoY_2019_ERR3404829_bin.1_k141_479 | ShaoY_2019_ERR3404829_bin.1_k141_479_11 | 7094 | 8416 | + | 2.A.120.1.1 |
| pfam | ShaoY_2019_ERR3404829_bin.1_k141_479 | ShaoY_2019_ERR3404829_bin.1_k141_479_12 | 8418 | 9023 | - | DNA_binding_1 |
| pfam | ShaoY_2019_ERR3404829_bin.1_k141_479 | ShaoY_2019_ERR3404829_bin.1_k141_479_13 | 8992 | 9585 | - | Protoglobin |
| TC | ShaoY_2019_ERR3404829_bin.1_k141_479 | ShaoY_2019_ERR3404829_bin.1_k141_479_14 | 9804 | 11696 | + | 2.A.36.3.1 |
| NULL(UNKNOWN) | ShaoY_2019_ERR3404829_bin.1_k141_479 | ShaoY_2019_ERR3404829_bin.1_k141_479_15 | 11733 | 12305 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | ShaoY_2019_ERR3404829_bin.1_k141_479 | ShaoY_2019_ERR3404829_bin.1_k141_479_16 | 12524 | 15922 | + | 3.A.1.122.2 |
| peptidase | ShaoY_2019_ERR3404829_bin.1_k141_479 | ShaoY_2019_ERR3404829_bin.1_k141_479_17 | 16036 | 16620 | + | C56.UNW |
| pfam | ShaoY_2019_ERR3404829_bin.1_k141_479 | ShaoY_2019_ERR3404829_bin.1_k141_479_18 | 16669 | 17580 | + | TatD_DNase |
| CAZyme | ShaoY_2019_ERR3404829_bin.1_k141_479 | ShaoY_2019_ERR3404829_bin.1_k141_479_19 | 17800 | 18960 | + | GH23 |
| CAZyme | ShaoY_2019_ERR3404829_bin.1_k141_479 | ShaoY_2019_ERR3404829_bin.1_k141_479_20 | 19057 | 20496 | + | GH23 |
Gene ID: ShaoY_2019_ERR3404829_bin.1_k141_479_11
Type: TC
Location: 7094 - 8416 (+)
Type: TC
Location: 7094 - 8416 (+)
Gene ID: ShaoY_2019_ERR3404829_bin.1_k141_479_12
Type: pfam
Location: 8418 - 9023 (-)
Type: pfam
Location: 8418 - 9023 (-)
Gene ID: ShaoY_2019_ERR3404829_bin.1_k141_479_13
Type: pfam
Location: 8992 - 9585 (-)
Type: pfam
Location: 8992 - 9585 (-)
Gene ID: ShaoY_2019_ERR3404829_bin.1_k141_479_14
Type: TC
Location: 9804 - 11696 (+)
Type: TC
Location: 9804 - 11696 (+)
Gene ID: ShaoY_2019_ERR3404829_bin.1_k141_479_15
Type:
Location: 11733 - 12305 (-)
Type:
Location: 11733 - 12305 (-)
Gene ID: ShaoY_2019_ERR3404829_bin.1_k141_479_16
Type: TC
Location: 12524 - 15922 (+)
Type: TC
Location: 12524 - 15922 (+)
Gene ID: ShaoY_2019_ERR3404829_bin.1_k141_479_17
Type: peptidase
Location: 16036 - 16620 (+)
Type: peptidase
Location: 16036 - 16620 (+)
Gene ID: ShaoY_2019_ERR3404829_bin.1_k141_479_18
Type: pfam
Location: 16669 - 17580 (+)
Type: pfam
Location: 16669 - 17580 (+)
Gene ID: ShaoY_2019_ERR3404829_bin.1_k141_479_19
Type: CAZyme
Location: 17800 - 18960 (+)
Type: CAZyme
Location: 17800 - 18960 (+)
Gene ID: ShaoY_2019_ERR3404829_bin.1_k141_479_20
Type: CAZyme
Location: 19057 - 20496 (+)
Type: CAZyme
Location: 19057 - 20496 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Actinomycetes
Order
Actinomycetales
Family
Actinomycetaceae
Genus
Pauljensenia
Species
Pauljensenia sp018375675
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
Loading chart...
No differentially abundant genes found in the 2019 study.