Cluster: ShaoY_2019_ERR3404686_bin.7_CGC8
🧬 Cluster Details
- Gene Count: 12
- CAZyme Count: 1
- Substrate:
- Genome ID: ShaoY_2019_ERR3404686_bin.7
- CGC Family ID: CGCFAM_02219
- Continent: Europe
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | ShaoY_2019_ERR3404686_bin.7_k119_3535 | ShaoY_2019_ERR3404686_bin.7_k119_3535_22 | 16456 | 17676 | - | GT81 |
| pfam | ShaoY_2019_ERR3404686_bin.7_k119_3535 | ShaoY_2019_ERR3404686_bin.7_k119_3535_23 | 17707 | 18495 | - | S6PP | Hydrolase_3 | Hydrolase_3 |
| pfam | ShaoY_2019_ERR3404686_bin.7_k119_3535 | ShaoY_2019_ERR3404686_bin.7_k119_3535_24 | 18846 | 19079 | - | DUF2525 |
| TC | ShaoY_2019_ERR3404686_bin.7_k119_3535 | ShaoY_2019_ERR3404686_bin.7_k119_3535_25 | 19394 | 19552 | + | 9.B.12.2.1 |
| pfam | ShaoY_2019_ERR3404686_bin.7_k119_3535 | ShaoY_2019_ERR3404686_bin.7_k119_3535_26 | 19616 | 19810 | + | DSRB |
| TC | ShaoY_2019_ERR3404686_bin.7_k119_3535 | ShaoY_2019_ERR3404686_bin.7_k119_3535_27 | 19942 | 21648 | - | 1.B.52.2.1 |
| TF | ShaoY_2019_ERR3404686_bin.7_k119_3535 | ShaoY_2019_ERR3404686_bin.7_k119_3535_28 | 21789 | 22424 | - | GerE |
| TC | ShaoY_2019_ERR3404686_bin.7_k119_3535 | ShaoY_2019_ERR3404686_bin.7_k119_3535_29 | 23054 | 23839 | - | 3.A.6.2.1 |
| TC | ShaoY_2019_ERR3404686_bin.7_k119_3535 | ShaoY_2019_ERR3404686_bin.7_k119_3535_30 | 23839 | 24108 | - | 3.A.6.2.1 |
| TC | ShaoY_2019_ERR3404686_bin.7_k119_3535 | ShaoY_2019_ERR3404686_bin.7_k119_3535_31 | 24134 | 24868 | - | 3.A.6.2.1 |
| TC | ShaoY_2019_ERR3404686_bin.7_k119_3535 | ShaoY_2019_ERR3404686_bin.7_k119_3535_32 | 24865 | 25263 | - | 3.A.6.2.1 |
| TC | ShaoY_2019_ERR3404686_bin.7_k119_3535 | ShaoY_2019_ERR3404686_bin.7_k119_3535_33 | 25266 | 25673 | - | 3.A.6.2.1 |
Gene ID: ShaoY_2019_ERR3404686_bin.7_k119_3535_22
Type: CAZyme
Location: 16456 - 17676 (-)
Type: CAZyme
Location: 16456 - 17676 (-)
Gene ID: ShaoY_2019_ERR3404686_bin.7_k119_3535_23
Type: pfam
Location: 17707 - 18495 (-)
Type: pfam
Location: 17707 - 18495 (-)
Gene ID: ShaoY_2019_ERR3404686_bin.7_k119_3535_24
Type: pfam
Location: 18846 - 19079 (-)
Type: pfam
Location: 18846 - 19079 (-)
Gene ID: ShaoY_2019_ERR3404686_bin.7_k119_3535_25
Type: TC
Location: 19394 - 19552 (+)
Type: TC
Location: 19394 - 19552 (+)
Gene ID: ShaoY_2019_ERR3404686_bin.7_k119_3535_26
Type: pfam
Location: 19616 - 19810 (+)
Type: pfam
Location: 19616 - 19810 (+)
Gene ID: ShaoY_2019_ERR3404686_bin.7_k119_3535_27
Type: TC
Location: 19942 - 21648 (-)
Type: TC
Location: 19942 - 21648 (-)
Gene ID: ShaoY_2019_ERR3404686_bin.7_k119_3535_28
Type: TF
Location: 21789 - 22424 (-)
Type: TF
Location: 21789 - 22424 (-)
Gene ID: ShaoY_2019_ERR3404686_bin.7_k119_3535_29
Type: TC
Location: 23054 - 23839 (-)
Type: TC
Location: 23054 - 23839 (-)
Gene ID: ShaoY_2019_ERR3404686_bin.7_k119_3535_30
Type: TC
Location: 23839 - 24108 (-)
Type: TC
Location: 23839 - 24108 (-)
Gene ID: ShaoY_2019_ERR3404686_bin.7_k119_3535_31
Type: TC
Location: 24134 - 24868 (-)
Type: TC
Location: 24134 - 24868 (-)
Gene ID: ShaoY_2019_ERR3404686_bin.7_k119_3535_32
Type: TC
Location: 24865 - 25263 (-)
Type: TC
Location: 24865 - 25263 (-)
Gene ID: ShaoY_2019_ERR3404686_bin.7_k119_3535_33
Type: TC
Location: 25266 - 25673 (-)
Type: TC
Location: 25266 - 25673 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Pantoea
Species
Pantoea astica
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.