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Cluster: ShaoY_2019_ERR3404686_bin.7_CGC41

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC ShaoY_2019_ERR3404686_bin.7_k119_16824 ShaoY_2019_ERR3404686_bin.7_k119_16824_19 16781 18229 + 4.A.1.2.3
CAZyme ShaoY_2019_ERR3404686_bin.7_k119_16824 ShaoY_2019_ERR3404686_bin.7_k119_16824_20 18262 19692 + GH1
pfam ShaoY_2019_ERR3404686_bin.7_k119_16824 ShaoY_2019_ERR3404686_bin.7_k119_16824_21 19997 20692 + TENA_THI-4
TC ShaoY_2019_ERR3404686_bin.7_k119_16824 ShaoY_2019_ERR3404686_bin.7_k119_16824_22 20689 21435 + 3.A.1.17.3
TC ShaoY_2019_ERR3404686_bin.7_k119_16824 ShaoY_2019_ERR3404686_bin.7_k119_16824_23 21432 22196 + 3.A.1.17.3
TC ShaoY_2019_ERR3404686_bin.7_k119_16824 ShaoY_2019_ERR3404686_bin.7_k119_16824_24 22193 23155 + 3.A.1.17.3
Gene ID: ShaoY_2019_ERR3404686_bin.7_k119_16824_19
Type: TC
Location: 16781 - 18229 (+)
Gene ID: ShaoY_2019_ERR3404686_bin.7_k119_16824_20
Type: CAZyme
Location: 18262 - 19692 (+)
Gene ID: ShaoY_2019_ERR3404686_bin.7_k119_16824_21
Type: pfam
Location: 19997 - 20692 (+)
Gene ID: ShaoY_2019_ERR3404686_bin.7_k119_16824_22
Type: TC
Location: 20689 - 21435 (+)
Gene ID: ShaoY_2019_ERR3404686_bin.7_k119_16824_23
Type: TC
Location: 21432 - 22196 (+)
Gene ID: ShaoY_2019_ERR3404686_bin.7_k119_16824_24
Type: TC
Location: 22193 - 23155 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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