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Cluster: ShaoY_2019_ERR3404686_bin.7_CGC40

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme ShaoY_2019_ERR3404686_bin.7_k119_16647 ShaoY_2019_ERR3404686_bin.7_k119_16647_2 376 2190 + GH15
peptidase ShaoY_2019_ERR3404686_bin.7_k119_16647 ShaoY_2019_ERR3404686_bin.7_k119_16647_3 2387 3481 + C82.UPA
TC ShaoY_2019_ERR3404686_bin.7_k119_16647 ShaoY_2019_ERR3404686_bin.7_k119_16647_4 3715 5316 + 2.A.20.1.1
TC ShaoY_2019_ERR3404686_bin.7_k119_16647 ShaoY_2019_ERR3404686_bin.7_k119_16647_5 5338 6525 - 2.A.1.46.7
pfam ShaoY_2019_ERR3404686_bin.7_k119_16647 ShaoY_2019_ERR3404686_bin.7_k119_16647_6 6598 7548 - Dus
TC ShaoY_2019_ERR3404686_bin.7_k119_16647 ShaoY_2019_ERR3404686_bin.7_k119_16647_7 7551 8915 - 1.I.1.1.3
TC ShaoY_2019_ERR3404686_bin.7_k119_16647 ShaoY_2019_ERR3404686_bin.7_k119_16647_8 9133 9525 - 9.B.15.1.2
Gene ID: ShaoY_2019_ERR3404686_bin.7_k119_16647_2
Type: CAZyme
Location: 376 - 2190 (+)
Gene ID: ShaoY_2019_ERR3404686_bin.7_k119_16647_3
Type: peptidase
Location: 2387 - 3481 (+)
Gene ID: ShaoY_2019_ERR3404686_bin.7_k119_16647_4
Type: TC
Location: 3715 - 5316 (+)
Gene ID: ShaoY_2019_ERR3404686_bin.7_k119_16647_5
Type: TC
Location: 5338 - 6525 (-)
Gene ID: ShaoY_2019_ERR3404686_bin.7_k119_16647_6
Type: pfam
Location: 6598 - 7548 (-)
Gene ID: ShaoY_2019_ERR3404686_bin.7_k119_16647_7
Type: TC
Location: 7551 - 8915 (-)
Gene ID: ShaoY_2019_ERR3404686_bin.7_k119_16647_8
Type: TC
Location: 9133 - 9525 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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