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Cluster: ShaoY_2019_ERR3404686_bin.7_CGC39

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC ShaoY_2019_ERR3404686_bin.7_k119_16396 ShaoY_2019_ERR3404686_bin.7_k119_16396_2 551 868 - 4.A.3.2.6
CAZyme ShaoY_2019_ERR3404686_bin.7_k119_16396 ShaoY_2019_ERR3404686_bin.7_k119_16396_3 892 2319 - GH1
TC ShaoY_2019_ERR3404686_bin.7_k119_16396 ShaoY_2019_ERR3404686_bin.7_k119_16396_4 2316 3665 - 4.A.3.2.9
TC ShaoY_2019_ERR3404686_bin.7_k119_16396 ShaoY_2019_ERR3404686_bin.7_k119_16396_5 3845 4153 + 4.A.3.2.9
pfam ShaoY_2019_ERR3404686_bin.7_k119_16396 ShaoY_2019_ERR3404686_bin.7_k119_16396_6 4186 5442 - Orn_DAP_Arg_deC | Orn_Arg_deC_N
TF ShaoY_2019_ERR3404686_bin.7_k119_16396 ShaoY_2019_ERR3404686_bin.7_k119_16396_7 5545 6465 + HTH_1
TC ShaoY_2019_ERR3404686_bin.7_k119_16396 ShaoY_2019_ERR3404686_bin.7_k119_16396_8 6462 7625 - 2.A.1.2.65
Gene ID: ShaoY_2019_ERR3404686_bin.7_k119_16396_2
Type: TC
Location: 551 - 868 (-)
Gene ID: ShaoY_2019_ERR3404686_bin.7_k119_16396_3
Type: CAZyme
Location: 892 - 2319 (-)
Gene ID: ShaoY_2019_ERR3404686_bin.7_k119_16396_4
Type: TC
Location: 2316 - 3665 (-)
Gene ID: ShaoY_2019_ERR3404686_bin.7_k119_16396_5
Type: TC
Location: 3845 - 4153 (+)
Gene ID: ShaoY_2019_ERR3404686_bin.7_k119_16396_6
Type: pfam
Location: 4186 - 5442 (-)
Gene ID: ShaoY_2019_ERR3404686_bin.7_k119_16396_7
Type: TF
Location: 5545 - 6465 (+)
Gene ID: ShaoY_2019_ERR3404686_bin.7_k119_16396_8
Type: TC
Location: 6462 - 7625 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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