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Cluster: ShaoY_2019_ERR3404686_bin.7_CGC38

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC ShaoY_2019_ERR3404686_bin.7_k119_16200 ShaoY_2019_ERR3404686_bin.7_k119_16200_3 3774 4562 - 3.A.1.17.10
TC ShaoY_2019_ERR3404686_bin.7_k119_16200 ShaoY_2019_ERR3404686_bin.7_k119_16200_4 4559 5350 - 3.A.1.17.10
pfam ShaoY_2019_ERR3404686_bin.7_k119_16200 ShaoY_2019_ERR3404686_bin.7_k119_16200_5 5361 6506 - Bac_luciferase
TC ShaoY_2019_ERR3404686_bin.7_k119_16200 ShaoY_2019_ERR3404686_bin.7_k119_16200_6 6518 7471 - 3.A.1.17.10
pfam ShaoY_2019_ERR3404686_bin.7_k119_16200 ShaoY_2019_ERR3404686_bin.7_k119_16200_7 7484 8035 - Flavodoxin_2 | FMN_red
CAZyme ShaoY_2019_ERR3404686_bin.7_k119_16200 ShaoY_2019_ERR3404686_bin.7_k119_16200_8 8784 9764 + GT2
Gene ID: ShaoY_2019_ERR3404686_bin.7_k119_16200_3
Type: TC
Location: 3774 - 4562 (-)
Gene ID: ShaoY_2019_ERR3404686_bin.7_k119_16200_4
Type: TC
Location: 4559 - 5350 (-)
Gene ID: ShaoY_2019_ERR3404686_bin.7_k119_16200_5
Type: pfam
Location: 5361 - 6506 (-)
Gene ID: ShaoY_2019_ERR3404686_bin.7_k119_16200_6
Type: TC
Location: 6518 - 7471 (-)
Gene ID: ShaoY_2019_ERR3404686_bin.7_k119_16200_7
Type: pfam
Location: 7484 - 8035 (-)
Gene ID: ShaoY_2019_ERR3404686_bin.7_k119_16200_8
Type: CAZyme
Location: 8784 - 9764 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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