Cluster: ShaoY_2019_ERR3404686_bin.7_CGC37
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 1
- Substrate:
- Genome ID: ShaoY_2019_ERR3404686_bin.7
- Continent: Europe
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | ShaoY_2019_ERR3404686_bin.7_k119_15462 | ShaoY_2019_ERR3404686_bin.7_k119_15462_9 | 6985 | 8478 | - | 2.A.39.3.4 |
| TF | ShaoY_2019_ERR3404686_bin.7_k119_15462 | ShaoY_2019_ERR3404686_bin.7_k119_15462_10 | 8507 | 9346 | + | GntR |
| pfam | ShaoY_2019_ERR3404686_bin.7_k119_15462 | ShaoY_2019_ERR3404686_bin.7_k119_15462_11 | 9343 | 10074 | + | Asp_Glu_race |
| CAZyme | ShaoY_2019_ERR3404686_bin.7_k119_15462 | ShaoY_2019_ERR3404686_bin.7_k119_15462_12 | 10109 | 11071 | + | CE4 |
Gene ID: ShaoY_2019_ERR3404686_bin.7_k119_15462_9
Type: TC
Location: 6985 - 8478 (-)
Type: TC
Location: 6985 - 8478 (-)
Gene ID: ShaoY_2019_ERR3404686_bin.7_k119_15462_10
Type: TF
Location: 8507 - 9346 (+)
Type: TF
Location: 8507 - 9346 (+)
Gene ID: ShaoY_2019_ERR3404686_bin.7_k119_15462_11
Type: pfam
Location: 9343 - 10074 (+)
Type: pfam
Location: 9343 - 10074 (+)
Gene ID: ShaoY_2019_ERR3404686_bin.7_k119_15462_12
Type: CAZyme
Location: 10109 - 11071 (+)
Type: CAZyme
Location: 10109 - 11071 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Pantoea
Species
Pantoea astica
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.