Cluster: ShaoY_2019_ERR3404686_bin.7_CGC34
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 1
- Substrate:
- Genome ID: ShaoY_2019_ERR3404686_bin.7
- Continent: Europe
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | ShaoY_2019_ERR3404686_bin.7_k119_14360 | ShaoY_2019_ERR3404686_bin.7_k119_14360_38 | 43488 | 44777 | - | 2.A.23.1.7 |
| STP | ShaoY_2019_ERR3404686_bin.7_k119_14360 | ShaoY_2019_ERR3404686_bin.7_k119_14360_39 | 45003 | 47009 | - | EAL | GGDEF |
| TC | ShaoY_2019_ERR3404686_bin.7_k119_14360 | ShaoY_2019_ERR3404686_bin.7_k119_14360_40 | 47126 | 50593 | - | 1.B.55.3.1 |
| TC | ShaoY_2019_ERR3404686_bin.7_k119_14360 | ShaoY_2019_ERR3404686_bin.7_k119_14360_41 | 50586 | 52874 | - | 4.D.3.1.6 |
| CAZyme | ShaoY_2019_ERR3404686_bin.7_k119_14360 | ShaoY_2019_ERR3404686_bin.7_k119_14360_42 | 52879 | 55482 | - | GT2 |
Gene ID: ShaoY_2019_ERR3404686_bin.7_k119_14360_38
Type: TC
Location: 43488 - 44777 (-)
Type: TC
Location: 43488 - 44777 (-)
Gene ID: ShaoY_2019_ERR3404686_bin.7_k119_14360_39
Type: STP
Location: 45003 - 47009 (-)
Type: STP
Location: 45003 - 47009 (-)
Gene ID: ShaoY_2019_ERR3404686_bin.7_k119_14360_40
Type: TC
Location: 47126 - 50593 (-)
Type: TC
Location: 47126 - 50593 (-)
Gene ID: ShaoY_2019_ERR3404686_bin.7_k119_14360_41
Type: TC
Location: 50586 - 52874 (-)
Type: TC
Location: 50586 - 52874 (-)
Gene ID: ShaoY_2019_ERR3404686_bin.7_k119_14360_42
Type: CAZyme
Location: 52879 - 55482 (-)
Type: CAZyme
Location: 52879 - 55482 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Pantoea
Species
Pantoea astica
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
Loading chart...
No differentially abundant genes found in the 2019 study.