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Cluster: ShaoY_2019_ERR3404686_bin.7_CGC32

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme ShaoY_2019_ERR3404686_bin.7_k119_13587 ShaoY_2019_ERR3404686_bin.7_k119_13587_1 2 1378 - GH77
CAZyme ShaoY_2019_ERR3404686_bin.7_k119_13587 ShaoY_2019_ERR3404686_bin.7_k119_13587_2 1387 3792 - GT35
TF ShaoY_2019_ERR3404686_bin.7_k119_13587 ShaoY_2019_ERR3404686_bin.7_k119_13587_3 3951 4709 - HTH_DeoR
TC ShaoY_2019_ERR3404686_bin.7_k119_13587 ShaoY_2019_ERR3404686_bin.7_k119_13587_4 4751 5572 - 9.B.104.1.1
STP ShaoY_2019_ERR3404686_bin.7_k119_13587 ShaoY_2019_ERR3404686_bin.7_k119_13587_5 5602 5928 - Rhodanese
pfam ShaoY_2019_ERR3404686_bin.7_k119_13587 ShaoY_2019_ERR3404686_bin.7_k119_13587_6 6155 7660 + DAO | DAO_C
TC ShaoY_2019_ERR3404686_bin.7_k119_13587 ShaoY_2019_ERR3404686_bin.7_k119_13587_7 8028 9683 + 3.B.1.1.4
pfam ShaoY_2019_ERR3404686_bin.7_k119_13587 ShaoY_2019_ERR3404686_bin.7_k119_13587_8 9683 10546 + CitG
pfam ShaoY_2019_ERR3404686_bin.7_k119_13587 ShaoY_2019_ERR3404686_bin.7_k119_13587_9 10555 10854 + ACP
TC ShaoY_2019_ERR3404686_bin.7_k119_13587 ShaoY_2019_ERR3404686_bin.7_k119_13587_10 10847 11680 + 3.B.1.1.4
TC ShaoY_2019_ERR3404686_bin.7_k119_13587 ShaoY_2019_ERR3404686_bin.7_k119_13587_11 11680 12480 + 3.B.1.1.4
TC ShaoY_2019_ERR3404686_bin.7_k119_13587 ShaoY_2019_ERR3404686_bin.7_k119_13587_12 12615 13574 + 2.A.69.3.3
Gene ID: ShaoY_2019_ERR3404686_bin.7_k119_13587_1
Type: CAZyme
Location: 2 - 1378 (-)
Gene ID: ShaoY_2019_ERR3404686_bin.7_k119_13587_2
Type: CAZyme
Location: 1387 - 3792 (-)
Gene ID: ShaoY_2019_ERR3404686_bin.7_k119_13587_3
Type: TF
Location: 3951 - 4709 (-)
Gene ID: ShaoY_2019_ERR3404686_bin.7_k119_13587_4
Type: TC
Location: 4751 - 5572 (-)
Gene ID: ShaoY_2019_ERR3404686_bin.7_k119_13587_5
Type: STP
Location: 5602 - 5928 (-)
Gene ID: ShaoY_2019_ERR3404686_bin.7_k119_13587_6
Type: pfam
Location: 6155 - 7660 (+)
Gene ID: ShaoY_2019_ERR3404686_bin.7_k119_13587_7
Type: TC
Location: 8028 - 9683 (+)
Gene ID: ShaoY_2019_ERR3404686_bin.7_k119_13587_8
Type: pfam
Location: 9683 - 10546 (+)
Gene ID: ShaoY_2019_ERR3404686_bin.7_k119_13587_9
Type: pfam
Location: 10555 - 10854 (+)
Gene ID: ShaoY_2019_ERR3404686_bin.7_k119_13587_10
Type: TC
Location: 10847 - 11680 (+)
Gene ID: ShaoY_2019_ERR3404686_bin.7_k119_13587_11
Type: TC
Location: 11680 - 12480 (+)
Gene ID: ShaoY_2019_ERR3404686_bin.7_k119_13587_12
Type: TC
Location: 12615 - 13574 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
ShaoY_2019_ERR3404686_bin.7_k119_13587_7 vegetarian > omnivore 1.66397 0.02193

🧭 Explore Read Mapping of CGC

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