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Cluster: ShaoY_2019_ERR3404686_bin.7_CGC31

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme ShaoY_2019_ERR3404686_bin.7_k119_13553 ShaoY_2019_ERR3404686_bin.7_k119_13553_1 3 533 + GT51
STP ShaoY_2019_ERR3404686_bin.7_k119_13553 ShaoY_2019_ERR3404686_bin.7_k119_13553_2 537 809 - PTS-HPr
pfam ShaoY_2019_ERR3404686_bin.7_k119_13553 ShaoY_2019_ERR3404686_bin.7_k119_13553_3 806 1660 - RapZ-like_N | PapZ_C
TC ShaoY_2019_ERR3404686_bin.7_k119_13553 ShaoY_2019_ERR3404686_bin.7_k119_13553_4 1708 2187 - 4.A.2.1.7
pfam ShaoY_2019_ERR3404686_bin.7_k119_13553 ShaoY_2019_ERR3404686_bin.7_k119_13553_5 2339 2626 - Ribosomal_S30AE
pfam ShaoY_2019_ERR3404686_bin.7_k119_13553 ShaoY_2019_ERR3404686_bin.7_k119_13553_6 2648 4081 - Sigma54_AID | Sigma54_DBD | Sigma54_CBD
TC ShaoY_2019_ERR3404686_bin.7_k119_13553 ShaoY_2019_ERR3404686_bin.7_k119_13553_7 4130 4855 - 1.B.42.1.2
TC ShaoY_2019_ERR3404686_bin.7_k119_13553 ShaoY_2019_ERR3404686_bin.7_k119_13553_8 4861 5412 - 1.B.42.1.2
TC ShaoY_2019_ERR3404686_bin.7_k119_13553 ShaoY_2019_ERR3404686_bin.7_k119_13553_9 5387 5956 - 1.B.42.1.2
pfam ShaoY_2019_ERR3404686_bin.7_k119_13553 ShaoY_2019_ERR3404686_bin.7_k119_13553_10 5953 6519 - Hydrolase_3
STP ShaoY_2019_ERR3404686_bin.7_k119_13553 ShaoY_2019_ERR3404686_bin.7_k119_13553_11 6533 7516 - CBS | CBS | SIS
TC ShaoY_2019_ERR3404686_bin.7_k119_13553 ShaoY_2019_ERR3404686_bin.7_k119_13553_12 7533 8513 - 2.A.19.5.1
TC ShaoY_2019_ERR3404686_bin.7_k119_13553 ShaoY_2019_ERR3404686_bin.7_k119_13553_13 8741 9556 + 3.A.1.27.3
TC ShaoY_2019_ERR3404686_bin.7_k119_13553 ShaoY_2019_ERR3404686_bin.7_k119_13553_14 9561 10343 + 3.A.1.27.3
TC ShaoY_2019_ERR3404686_bin.7_k119_13553 ShaoY_2019_ERR3404686_bin.7_k119_13553_15 10348 10893 + 3.A.1.27.3
TC ShaoY_2019_ERR3404686_bin.7_k119_13553 ShaoY_2019_ERR3404686_bin.7_k119_13553_16 10909 11544 + 3.A.1.27.3
TC ShaoY_2019_ERR3404686_bin.7_k119_13553 ShaoY_2019_ERR3404686_bin.7_k119_13553_17 11544 11849 + 3.A.1.27.3
Gene ID: ShaoY_2019_ERR3404686_bin.7_k119_13553_1
Type: CAZyme
Location: 3 - 533 (+)
Gene ID: ShaoY_2019_ERR3404686_bin.7_k119_13553_2
Type: STP
Location: 537 - 809 (-)
Gene ID: ShaoY_2019_ERR3404686_bin.7_k119_13553_3
Type: pfam
Location: 806 - 1660 (-)
Gene ID: ShaoY_2019_ERR3404686_bin.7_k119_13553_4
Type: TC
Location: 1708 - 2187 (-)
Gene ID: ShaoY_2019_ERR3404686_bin.7_k119_13553_5
Type: pfam
Location: 2339 - 2626 (-)
Gene ID: ShaoY_2019_ERR3404686_bin.7_k119_13553_6
Type: pfam
Location: 2648 - 4081 (-)
Gene ID: ShaoY_2019_ERR3404686_bin.7_k119_13553_7
Type: TC
Location: 4130 - 4855 (-)
Gene ID: ShaoY_2019_ERR3404686_bin.7_k119_13553_8
Type: TC
Location: 4861 - 5412 (-)
Gene ID: ShaoY_2019_ERR3404686_bin.7_k119_13553_9
Type: TC
Location: 5387 - 5956 (-)
Gene ID: ShaoY_2019_ERR3404686_bin.7_k119_13553_10
Type: pfam
Location: 5953 - 6519 (-)
Gene ID: ShaoY_2019_ERR3404686_bin.7_k119_13553_11
Type: STP
Location: 6533 - 7516 (-)
Gene ID: ShaoY_2019_ERR3404686_bin.7_k119_13553_12
Type: TC
Location: 7533 - 8513 (-)
Gene ID: ShaoY_2019_ERR3404686_bin.7_k119_13553_13
Type: TC
Location: 8741 - 9556 (+)
Gene ID: ShaoY_2019_ERR3404686_bin.7_k119_13553_14
Type: TC
Location: 9561 - 10343 (+)
Gene ID: ShaoY_2019_ERR3404686_bin.7_k119_13553_15
Type: TC
Location: 10348 - 10893 (+)
Gene ID: ShaoY_2019_ERR3404686_bin.7_k119_13553_16
Type: TC
Location: 10909 - 11544 (+)
Gene ID: ShaoY_2019_ERR3404686_bin.7_k119_13553_17
Type: TC
Location: 11544 - 11849 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
ShaoY_2019_ERR3404686_bin.7_k119_13553_3 vegetarian > omnivore 1.29453 0.01864

🧭 Explore Read Mapping of CGC

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